[HTML][HTML] Isothermal amplification of nucleic acids: The race for the next “gold standard”

BB Oliveira, B Veigas, PV Baptista - Frontiers in Sensors, 2021 - frontiersin.org
Nucleic acid amplification technologies (NAATs) have become fundamental tools in
molecular diagnostics, due to their ability to detect small amounts of target molecules. Since …

[HTML][HTML] PCR inhibition in qPCR, dPCR and MPS—mechanisms and solutions

M Sidstedt, P Rådström, J Hedman - Analytical and bioanalytical chemistry, 2020 - Springer
DNA analysis has seen an incredible development in terms of instrumentation, assays and
applications over the last years. Massively parallel sequencing (MPS) and digital PCR are …

[HTML][HTML] Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies

A Rhie, BP Walenz, S Koren, AM Phillippy - Genome biology, 2020 - Springer
Recent long-read assemblies often exceed the quality and completeness of available
reference genomes, making validation challenging. Here we present Merqury, a novel tool …

[HTML][HTML] Systematic evaluation of error rates and causes in short samples in next-generation sequencing

F Pfeiffer, C Gröber, M Blank, K Händler, M Beyer… - Scientific reports, 2018 - nature.com
Next-generation sequencing (NGS) is the method of choice when large numbers of
sequences have to be obtained. While the technique is widely applied, varying error rates …

Recombinase polymerase amplification for diagnostic applications

RK Daher, G Stewart, M Boissinot… - Clinical …, 2016 - academic.oup.com
BACKGROUND First introduced in 2006, recombinase polymerase amplification (RPA) has
stirred great interest, as evidenced by 75 publications as of October 2015, with 56 of them …

An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage

AM Newman, SV Bratman, J To, JF Wynne… - Nature medicine, 2014 - nature.com
Circulating tumor DNA (ctDNA) is a promising biomarker for noninvasive assessment of
cancer burden, but existing ctDNA detection methods have insufficient sensitivity or patient …

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

International Wheat Genome Sequencing Consortium … - Science, 2014 - science.org
An ordered draft sequence of the 17-gigabase hexaploid bread wheat (Triticum aestivum)
genome has been produced by sequencing isolated chromosome arms. We have annotated …

Anchored multiplex PCR for targeted next-generation sequencing

Z Zheng, M Liebers, B Zhelyazkova, Y Cao, D Panditi… - Nature medicine, 2014 - nature.com
We describe a rapid target enrichment method for next-generation sequencing, termed
anchored multiplex PCR (AMP), that is compatible with low nucleic acid input from formalin …

Library construction for next-generation sequencing: overviews and challenges

SR Head, HK Komori, SA LaMere, T Whisenant… - …, 2014 - Taylor & Francis
High-throughput sequencing, also known as next-generation sequencing (NGS), has
revolutionized genomic research. In recent years, NGS technology has steadily improved …

[HTML][HTML] Characterizing and measuring bias in sequence data

MG Ross, C Russ, M Costello, A Hollinger, NJ Lennon… - Genome biology, 2013 - Springer
Background DNA sequencing technologies deviate from the ideal uniform distribution of
reads. These biases impair scientific and medical applications. Accordingly, we have …