Poisson–boltzmann–nernst–planck model

Q Zheng, GW Wei - The Journal of chemical physics, 2011 - pubs.aip.org
The Poisson–Nernst–Planck (PNP) model is based on a mean-field approximation of ion
interactions and continuum descriptions of concentration and electrostatic potential. It …

Variational multiscale models for charge transport

GW Wei, Q Zheng, Z Chen, K Xia - siam REVIEW, 2012 - SIAM
This work presents a few variational multiscale models for charge transport in complex
physical, chemical, and biological systems and engineering devices, such as fuel cells, solar …

A free energy satisfying finite difference method for Poisson–Nernst–Planck equations

H Liu, Z Wang - Journal of Computational Physics, 2014 - Elsevier
In this work we design and analyze a free energy satisfying finite difference method for
solving Poisson–Nernst–Planck equations in a bounded domain. The algorithm is of second …

Linearized conservative finite element methods for the Nernst–Planck–Poisson equations

H Gao, D He - Journal of Scientific Computing, 2017 - Springer
The aim of this paper is to present and study new linearized conservative schemes with finite
element approximations for the Nernst–Planck–Poisson equations. For the linearized …

A positivity preserving and free energy dissipative difference scheme for the Poisson–Nernst–Planck system

D He, K Pan, X Yue - Journal of Scientific Computing, 2019 - Springer
In this paper, based on the reformulation of the Nernst–Planck equations, we construct an
unconditionally stable semi-implicit linearized difference scheme for the time dependent …

A review of mathematical modeling, simulation and analysis of membrane channel charge transport

D Chen, G Wei - arXiv preprint arXiv:1611.04573, 2016 - arxiv.org
The molecular mechanism of ion channel gating and substrate modulation is elusive for
many voltage gated ion channels, such as eukaryotic sodium ones. The understanding of …

Progress in developing Poisson-Boltzmann equation solvers

C Li, L Li, M Petukh, E Alexov - Computational and Mathematical …, 2013 - degruyter.com
This review outlines the recent progress made in developing more accurate and efficient
solutions to model electrostatics in systems comprised of bio-macromolecules and …

A linearized local conservative mixed finite element method for Poisson–Nernst–Planck equations

H Gao, P Sun - Journal of Scientific Computing, 2018 - Springer
In this paper, a linearized local conservative mixed finite element method is proposed and
analyzed for Poisson–Nernst–Planck (PNP) equations, where the mass fluxes and the …

Multiscale, multiphysics and multidomain models I: Basic theory

GW Wei - Journal of Theoretical and Computational Chemistry, 2013 - World Scientific
This work extends our earlier two-domain formulation of a differential geometry based
multiscale paradigm into a multidomain theory, which endows us the ability to …

Numerical analysis of locally conservative weak Galerkin dual-mixed finite element method for the time-dependent Poisson–Nernst–Planck system

Z Gharibi, M Dehghan, M Abbaszadeh - Computers & Mathematics with …, 2021 - Elsevier
In this study, a linearized locally conservative scheme, based on using a weak Galerkin
(WG)-mixed finite element method (MFEM), is developed for the Poisson–Nernst–Planck …