Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

Sex chromosome evolution: so many exceptions to the rules

BLS Furman, DCH Metzger, I Darolti… - Genome biology and …, 2020 - academic.oup.com
Genomic analysis of many nonmodel species has uncovered an incredible diversity of sex
chromosome systems, making it possible to empirically test the rich body of evolutionary …

De novo genome assembly and analyses of 12 founder inbred lines provide insights into maize heterosis

B Wang, M Hou, J Shi, L Ku, W Song, C Li, Q Ning… - Nature Genetics, 2023 - nature.com
Hybrid maize displays superior heterosis and contributes over 30% of total worldwide cereal
production. However, the molecular mechanisms of heterosis remain obscure. Here we …

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

J Salojärvi, A Rambani, Z Yu, R Guyot, S Strickler… - Nature …, 2024 - nature.com
Coffea arabica, an allotetraploid hybrid of Coffea eugenioides and Coffea canephora, is the
source of approximately 60% of coffee products worldwide, and its cultivated accessions …

Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato

S Soyk, NA Müller, SJ Park, I Schmalenbach, K Jiang… - Nature Genetics, 2017 - nature.com
Plants evolved so that their flowering is triggered by seasonal changes in day length.
However, day-length sensitivity in crops limits their geographical range of cultivation, and …

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

B Chalhoub, F Denoeud, S Liu, IAP Parkin, H Tang… - science, 2014 - science.org
Oilseed rape (Brassica napus L.) was formed~ 7500 years ago by hybridization between B.
rapa and B. oleracea, followed by chromosome doubling, a process known as …

Homoeologous exchanges, segmental allopolyploidy, and polyploid genome evolution

AS Mason, JF Wendel - Frontiers in Genetics, 2020 - frontiersin.org
Polyploidy is a major force in plant evolution and speciation. In newly formed allopolyploids,
pairing between related chromosomes from different subgenomes (homoeologous …

Hybridization and speciation

R Abbott, D Albach, S Ansell, JW Arntzen… - Journal of …, 2013 - academic.oup.com
Hybridization has many and varied impacts on the process of speciation. Hybridization may
slow or reverse differentiation by allowing gene flow and recombination. It may accelerate …

Polyploidy: pitfalls and paths to a paradigm

DE Soltis, CJ Visger, DB Marchant… - American journal of …, 2016 - Wiley Online Library
Investigators have long searched for a polyploidy paradigm—rules or principles that might
be common following polyploidization (whole‐genome duplication, WGD). Here we attempt …

Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …