Therapeutically increasing MHC-I expression potentiates immune checkpoint blockade

SS Gu, W Zhang, X Wang, P Jiang, N Traugh, Z Li… - Cancer discovery, 2021 - AACR
Immune checkpoint blockade (ICB) therapy revolutionized cancer treatment, but many
patients with impaired MHC-I expression remain refractory. Here, we combined FACS-based …

Super-enhancer omics in stem cell

H Ma, J Qu, Z Pang, J Luo, M Yan, W Xu, H Zhuang… - Molecular Cancer, 2024 - Springer
The hallmarks of stem cells, such as proliferation, self-renewal, development, differentiation,
and regeneration, are critical to maintain stem cell identity which is sustained by genetic and …

Integrative approaches based on genomic techniques in the functional studies on enhancers

Q Wang, J Zhang, Z Liu, Y Duan… - Briefings in …, 2024 - academic.oup.com
With the development of sequencing technology and the dramatic drop in sequencing cost,
the functions of noncoding genes are being characterized in a wide variety of fields (eg …

CDK4/6 inhibition reprograms the breast cancer enhancer landscape by stimulating AP-1 transcriptional activity

AC Watt, P Cejas, MJ DeCristo, O Metzger-Filho… - Nature Cancer, 2021 - nature.com
Pharmacologic inhibitors of cyclin-dependent kinases 4 and 6 (CDK4/6) were designed to
induce cancer cell cycle arrest. Recent studies have suggested that these agents also exert …

Epigenomic analysis of formalin-fixed paraffin-embedded samples by CUT&Tag

S Henikoff, JG Henikoff, K Ahmad, RM Paranal… - Nature …, 2023 - nature.com
For more than a century, formalin-fixed paraffin-embedded (FFPE) sample preparation has
been the preferred method for long-term preservation of biological material. However, the …

Spinal-specific super enhancer in neuropathic pain

Y Tao, QH Wang, XT Li, Y Liu, RH Sun… - Journal of …, 2023 - Soc Neuroscience
Dysfunctional gene expression in nociceptive pathways plays a critical role in the
development and maintenance of neuropathic pain. Super enhancers (SEs), composed of a …

FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers

L Zhao, P Xing, VK Polavarapu, M Zhao… - Nucleic Acids …, 2021 - academic.oup.com
The majority of biopsies in both basic research and translational cancer studies are
preserved in the format of archived formalin-fixed paraffin-embedded (FFPE) samples …

[HTML][HTML] A High-Throughput PIXUL–Matrix-Based Toolbox to Profile Frozen and Formalin-Fixed Paraffin-Embedded Tissues Multiomes

D Mar, IM Babenko, R Zhang, WS Noble… - Laboratory …, 2024 - Elsevier
Large-scale high-dimensional multiomics studies are essential to unravel molecular
complexity in health and disease. We developed an integrated system for tissue sampling …

The current state of chromatin immunoprecipitation (ChIP) from FFPE tissues

S Amatori, M Fanelli - International journal of molecular sciences, 2022 - mdpi.com
Cancer cells accumulate epigenomic aberrations that contribute to cancer initiation and
progression by altering both the genomic stability and the expression of genes. The …

PDP type brain tumor in association with multiple endocrine neoplasia type 1

HB Einarsson, AL Frederiksen, IS Pedersen, MS Ettrup… - Heliyon, 2024 - cell.com
Multiple endocrine neoplasia type 1 (MEN1) is a rare autosomal dominant syndrome caused
by inactivating pathogenic variants in the tumor suppressor gene menin 1 on chromosome …