DNA methylation pathways and their crosstalk with histone methylation

J Du, LM Johnson, SE Jacobsen… - Nature reviews Molecular …, 2015 - nature.com
Methylation of DNA and of histone 3 at Lys 9 (H3K9) are highly correlated with gene
silencing in eukaryotes from fungi to humans. Both of these epigenetic marks need to be …

The chromatin code of fungal secondary metabolite gene clusters

A Gacek, J Strauss - Applied Microbiology and Biotechnology, 2012 - Springer
Secondary metabolite biosynthesis genes in fungi are usually physically linked and
organized in large gene clusters. The physical linkage of genes involved in the same …

Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen

L Faino, MF Seidl, X Shi-Kunne, M Pauper… - Genome …, 2016 - genome.cshlp.org
Genomic plasticity enables adaptation to changing environments, which is especially
relevant for pathogens that engage in “arms races” with their hosts. In many pathogens …

FBXO44 promotes DNA replication-coupled repetitive element silencing in cancer cells

JZ Shen, Z Qiu, Q Wu, D Finlay, G Garcia, D Sun… - Cell, 2021 - cell.com
Repetitive elements (REs) compose∼ 50% of the human genome and are normally
transcriptionally silenced, although the mechanism has remained elusive. Through an RNAi …

Epigenetic Control of Effector Gene Expression in the Plant Pathogenic Fungus Leptosphaeria maculans

JL Soyer, M El Ghalid, N Glaser, B Ollivier… - PLoS …, 2014 - journals.plos.org
Plant pathogens secrete an arsenal of small secreted proteins (SSPs) acting as effectors that
modulate host immunity to facilitate infection. SSP-encoding genes are often located in …

Histone methylation by SET domain proteins in fungi

M Freitag - Annual review of microbiology, 2017 - annualreviews.org
Histone-modifying enzymes are responsible for regulating transcription, recombination, DNA
repair, DNA replication, chromatid cohesion, and chromosome segregation. Fungi are …

Neurospora crassa, a model system for epigenetics research

R Aramayo, EU Selker - Cold Spring Harbor …, 2013 - cshperspectives.cshlp.org
The filamentous fungus Neurospora crassa has provided a rich source of knowledge on
epigenetic phenomena that would have been difficult or impossible to gain from other …

Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin

K Jamieson, ET Wiles, KJ McNaught, S Sidoli… - Genome …, 2016 - genome.cshlp.org
Methylated lysine 27 on histone H3 (H3K27me) marks repressed “facultative
heterochromatin,” including developmentally regulated genes in plants and animals. The …

[HTML][HTML] Evolutionary persistence of DNA methylation for millions of years after ancient loss of a de novo methyltransferase

S Catania, PA Dumesic, H Pimentel, A Nasif… - Cell, 2020 - cell.com
Cytosine methylation of DNA is a widespread modification of DNA that plays numerous
critical roles. In the yeast Cryptococcus neoformans, CG methylation occurs in transposon …

[PDF][PDF] Nuclear genome organization in fungi: From gene folding to Rabl chromosomes

DE Torres, AT Reckard, AD Klocko… - FEMS Microbiology …, 2023 - academic.oup.com
Comparative genomics has recently provided unprecedented insights into the biology and
evolution of the fungal lineage. In the postgenomics era, a major research interest focuses …