Missing genes in metabolic pathways: a comparative genomics approach

A Osterman, R Overbeek - Current opinion in chemical biology, 2003 - Elsevier
The new techniques of genome context analysis—chromosomal gene clustering, protein
fusions, occurrence profiles and shared regulatory sites—infer functional coupling between …

Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution

PR Kensche, V van Noort… - Journal of the Royal …, 2008 - royalsocietypublishing.org
The gap between the amount of genome information released by genome sequencing
projects and our knowledge about the proteins' functions is rapidly increasing. To fill this …

Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima

Y Zhang, I Thiele, D Weekes, Z Li, L Jaroszewski… - Science, 2009 - science.org
Metabolic pathways have traditionally been described in terms of biochemical reactions and
metabolites. With the use of structural genomics and systems biology, we generated a three …

Functionally comparable but evolutionarily distinct nucleotide-targeting effectors help identify conserved paradigms across diverse immune systems

GG Nicastro, AM Burroughs, LM Iyer… - Nucleic Acids …, 2023 - academic.oup.com
While nucleic acid-targeting effectors are known to be central to biological conflicts and anti-
selfish element immunity, recent findings have revealed immune effectors that target their …

Sulfolobus tengchongensis Spindle-Shaped Virus STSV1: Virus-Host Interactions and Genomic Features

X Xiang, L Chen, X Huang, Y Luo, Q She… - Journal of …, 2005 - Am Soc Microbiol
ABSTRACT A virus infecting the hyperthermophilic archaeon Sulfolobus tengchongensis
has been isolated from a field sample from Tengchong, China, and characterized. The virus …

Mycobacterium tuberculosis thymidylate synthase gene thyX is essential and potentially bifunctional, while thyA deletion confers resistance to p-aminosalicylic acid

AS Fivian-Hughes, J Houghton, EO Davis - Microbiology, 2012 - microbiologyresearch.org
Thymidylate synthase (TS) enzymes catalyse the biosynthesis of deoxythymidine
monophosphate (dTMP or thymidylate), and so are important for DNA replication and repair …

Life without dihydrofolate reductase FolA

H Myllykallio, D Leduc, J Filee, U Liebl - TRENDS in Microbiology, 2003 - cell.com
Reduced folate derivatives participate in numerous reactions of bacterial intermediary
metabolism. Consequently, the well-characterized enzyme implicated in the formation of …

Functional analysis of FAD-dependent thymidylate synthase ThyX from Paramecium bursaria Chlorella virus-1

S Graziani, Y Xia, JR Gurnon, JL Van Etten… - Journal of Biological …, 2004 - ASBMB
Sequence analysis of the 330-kb double-stranded DNA genome of Paramecium bursaria
chlorella virus-1 revealed an open reading frame A674R that encodes a protein with up to …

Functional analysis of substrate and cofactor complex structures of a thymidylate synthase-complementing protein

II Mathews, AM Deacon, JM Canaves, D McMullan… - Structure, 2003 - cell.com
Like thymidylate synthase (TS) in eukaryotes, the thymidylate synthase-complementing
proteins (TSCPs) are mandatory for cell survival of many prokaryotes in the absence of …

Structure of the Mycobacterium tuberculosis flavin dependent thymidylate synthase (MtbThyX) at 2.0 Å resolution

P Sampathkumar, S Turley, JE Ulmer, HG Rhie… - Journal of molecular …, 2005 - Elsevier
A novel flavin-dependent thymidylate synthase was identified recently as an essential gene
in many archaebacteria and some pathogenic eubacteria. This enzyme, ThyX, is a potential …