Role of immediate-early genes in synaptic plasticity and neuronal ensembles underlying the memory trace

K Minatohara, M Akiyoshi, H Okuno - Frontiers in molecular …, 2016 - frontiersin.org
In the brain, neuronal gene expression is dynamically changed in response to neuronal
activity. In particular, the expression of immediate-early genes (IEGs) such as egr-1, c-fos …

Whole-body and whole-organ clearing and imaging techniques with single-cell resolution: toward organism-level systems biology in mammals

EA Susaki, HR Ueda - Cell chemical biology, 2016 - cell.com
Organism-level systems biology aims to identify, analyze, control and design cellular circuits
in organisms. Many experimental and computational approaches have been developed …

Labelling and optical erasure of synaptic memory traces in the motor cortex

A Hayashi-Takagi, S Yagishita, M Nakamura, F Shirai… - Nature, 2015 - nature.com
Dendritic spines are the major loci of synaptic plasticity and are considered as possible
structural correlates of memory. Nonetheless, systematic manipulation of specific subsets of …

On-demand cell-autonomous gene therapy for brain circuit disorders

Y Qiu, N O'Neill, B Maffei, C Zourray… - Science, 2022 - science.org
Several neurodevelopmental and neuropsychiatric disorders are characterized by
intermittent episodes of pathological activity. Although genetic therapies offer the ability to …

Permanent genetic access to transiently active neurons via TRAP: targeted recombination in active populations

CJ Guenthner, K Miyamichi, HH Yang, HC Heller… - Neuron, 2013 - cell.com
Targeting genetically encoded tools for neural circuit dissection to relevant cellular
populations is a major challenge in neurobiology. We developed an approach, targeted …

Widespread transcription at neuronal activity-regulated enhancers

TK Kim, M Hemberg, JM Gray, AM Costa, DM Bear… - Nature, 2010 - nature.com
We used genome-wide sequencing methods to study stimulus-dependent enhancer function
in mouse cortical neurons. We identified∼ 12,000 neuronal activity-regulated enhancers …

Neuronal activity modifies the chromatin accessibility landscape in the adult brain

Y Su, J Shin, C Zhong, S Wang, P Roychowdhury… - Nature …, 2017 - nature.com
Neuronal activity-induced gene expression modulates the function and plasticity of the
nervous system. It is unknown whether and to what extent neuronal activity may trigger …

Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression

JA Beagan, ED Pastuzyn, LR Fernandez, MH Guo… - Nature …, 2020 - nature.com
Neuronal activation induces rapid transcription of immediate early genes (IEGs) and longer-
term chromatin remodeling around secondary response genes (SRGs). Here, we use high …

Functional connectivity of multiple brain regions required for the consolidation of social recognition memory

T Tanimizu, JW Kenney, E Okano… - Journal of …, 2017 - Soc Neuroscience
Social recognition memory is an essential and basic component of social behavior that is
used to discriminate familiar and novel animals/humans. Previous studies have shown the …

Hippocampal somatostatin interneurons control the size of neuronal memory ensembles

T Stefanelli, C Bertollini, C Lüscher, D Muller… - Neuron, 2016 - cell.com
Hippocampal neurons activated during encoding drive the recall of contextual fear memory.
Little is known about how such ensembles emerge during acquisition and eventually form …