Artificial intelligence for predictive biomarker discovery in immuno-oncology: a systematic review

A Prelaj, V Miskovic, M Zanitti, F Trovo, C Genova… - Annals of …, 2023 - Elsevier
Background The widespread use of Immune checkpoint-inhibitors (ICI) has revolutionised
treatment of multiple cancer types. However, selecting patients who may benefit from ICI …

[HTML][HTML] Multi-kingdom gut microbiota analyses define bacterial-fungal interplay and microbial markers of pan-cancer immunotherapy across cohorts

X Huang, M Hu, T Sun, J Li, Y Zhou, Y Yan, B Xuan… - Cell Host & Microbe, 2023 - cell.com
The effect of gut bacteria on the response to immune checkpoint inhibitors (ICIs) has been
studied, but the relationship between fungi and ICI responses is not fully understood. Herein …

[HTML][HTML] Microbiome bacterial influencers of host immunity and response to immunotherapy

Y Yousefi, KJ Baines, SM Vareki - Cell Reports Medicine, 2024 - cell.com
The gut microbiota influences anti-tumor immunity and can induce or inhibit response to
immune checkpoint inhibitors (ICIs). Therefore, microbiome features are being studied as …

[HTML][HTML] An integrated tumor, immune and microbiome atlas of colon cancer

J Roelands, PJK Kuppen, EI Ahmed, R Mall… - Nature medicine, 2023 - nature.com
The lack of multi-omics cancer datasets with extensive follow-up information hinders the
identification of accurate biomarkers of clinical outcome. In this cohort study, we performed …

[HTML][HTML] Attempting to identify bacterial allies in immunotherapy of NSCLC patients

A Grenda, E Iwan, P Krawczyk, M Frąk, I Chmielewska… - Cancers, 2022 - mdpi.com
Simple Summary One of the newest therapies for the treatment of non-small cell lung cancer
is immunotherapy targeting the immune checkpoints PD-1 and PD-L1. Factors are now …

Defining clinically useful biomarkers of immune checkpoint inhibitors in solid tumours

AM Holder, A Dedeilia, K Sierra-Davidson… - Nature Reviews …, 2024 - nature.com
Although more than a decade has passed since the approval of immune checkpoint
inhibitors (ICIs) for the treatment of melanoma and non-small-cell lung, breast and …

[HTML][HTML] Deciphering the gut microbiome: The revolution of artificial intelligence in microbiota analysis and intervention

M Abavisani, SK Foroushan, N Ebadpour… - Current Research in …, 2024 - Elsevier
The human gut microbiome is an intricate ecosystem with profound implications for host
metabolism, immune function, and neuroendocrine activity. Over the years, studies have …

[HTML][HTML] The role of microbiomes in gastrointestinal cancers: new insights

A Yarahmadi, H Afkhami - Frontiers in Oncology, 2024 - frontiersin.org
Gastrointestinal (GI) cancers constitute more than 33% of new cancer cases worldwide and
pose a considerable burden on public health. There exists a growing body of evidence that …

[HTML][HTML] Methodology for biomarker discovery with reproducibility in microbiome data using machine learning

D Rojas-Velazquez, S Kidwai, AD Kraneveld… - BMC …, 2024 - Springer
Background In recent years, human microbiome studies have received increasing attention
as this field is considered a potential source for clinical applications. With the advancements …

[HTML][HTML] A review of machine learning methods for cancer characterization from microbiome data

M Teixeira, F Silva, RM Ferreira, T Pereira… - NPJ Precision …, 2024 - nature.com
Recent studies have shown that the microbiome can impact cancer development,
progression, and response to therapies suggesting microbiome-based approaches for …