Stochastic community assembly: does it matter in microbial ecology?

J Zhou, D Ning - Microbiology and molecular biology reviews, 2017 - Am Soc Microbiol
Understanding the mechanisms controlling community diversity, functions, succession, and
biogeography is a central, but poorly understood, topic in ecology, particularly in microbial …

Tara Oceans: towards global ocean ecosystems biology

S Sunagawa, SG Acinas, P Bork, C Bowler… - Nature Reviews …, 2020 - nature.com
A planetary-scale understanding of the ocean ecosystem, particularly in light of climate
change, is crucial. Here, we review the work of Tara Oceans, an international …

Plastic pollution fosters more microbial growth in lakes than natural organic matter

EA Sheridan, JA Fonvielle, S Cottingham… - Nature …, 2022 - nature.com
Plastic debris widely pollutes freshwaters. Abiotic and biotic degradation of plastics releases
carbon-based substrates that are available for heterotrophic growth, but little is known about …

Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity

JP Shaffer, LF Nothias, LR Thompson, JG Sanders… - Nature …, 2022 - nature.com
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …

Global diversity and biogeography of bacterial communities in wastewater treatment plants

L Wu, D Ning, B Zhang, Y Li, P Zhang, X Shan… - Nature …, 2019 - nature.com
Microorganisms in wastewater treatment plants (WWTPs) are essential for water purification
to protect public and environmental health. However, the diversity of microorganisms and …

A communal catalogue reveals Earth's multiscale microbial diversity

LR Thompson, JG Sanders, D McDonald, A Amir… - Nature, 2017 - nature.com
Our growing awareness of the microbial world's importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …

Global trends in marine plankton diversity across kingdoms of life

FM Ibarbalz, N Henry, MC Brandão, S Martini… - Cell, 2019 - cell.com
The ocean is home to myriad small planktonic organisms that underpin the functioning of
marine ecosystems. However, their spatial patterns of diversity and the underlying drivers …

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

AE Parada, DM Needham… - Environmental …, 2016 - Wiley Online Library
Microbial community analysis via high‐throughput sequencing of amplified 16S rRNA genes
is an essential microbiology tool. We found the popular primer pair 515F (515F‐C) and …

Insights into global diatom distribution and diversity in the world's ocean

S Malviya, E Scalco, S Audic… - Proceedings of the …, 2016 - National Acad Sciences
Diatoms (Bacillariophyta) constitute one of the most diverse and ecologically important
groups of phytoplankton. They are considered to be particularly important in nutrient-rich …

Temperature mediates continental-scale diversity of microbes in forest soils

J Zhou, YE Deng, L Shen, C Wen, Q Yan… - Nature …, 2016 - nature.com
Climate warming is increasingly leading to marked changes in plant and animal biodiversity,
but it remains unclear how temperatures affect microbial biodiversity, particularly in …