E French, BT McInnes - Journal of biomedical informatics, 2023 - Elsevier
Abstract Biomedical Entity Linking (BEL) is the task of mapping of spans of text within biomedical documents to normalized, unique identifiers within an ontology. This is an …
CH Wei, A Allot, R Leaman, Z Lu - Nucleic acids research, 2019 - academic.oup.com
Abstract PubTator Central (https://www. ncbi. nlm. nih. gov/research/pubtator/) is a web service for viewing and retrieving bioconcept annotations in full text biomedical articles …
R Leaman, Z Lu - Bioinformatics, 2016 - academic.oup.com
Motivation: Text mining is increasingly used to manage the accelerating pace of the biomedical literature. Many text mining applications depend on accurate named entity …
Motivation: Despite the central role of diseases in biomedical research, there have been much fewer attempts to automatically determine which diseases are mentioned in a text …
Z Ji, Q Wei, H Xu - AMIA Summits on Translational Science …, 2020 - ncbi.nlm.nih.gov
Developing high-performance entity normalization algorithms that can alleviate the term variation problem is of great interest to the biomedical community. Although deep learning …
Biomedical named entities often play important roles in many biomedical text mining tools. However, due to the incompleteness of provided synonyms and numerous variations in their …
Chemical compounds and drugs are an important class of entities in biomedical research with great potential in a wide range of applications, including clinical medicine. Locating …
CH Wei, HY Kao, Z Lu - BioMed research international, 2015 - Wiley Online Library
The automatic recognition of gene names and their associated database identifiers from biomedical text has been widely studied in recent years, as these tasks play an important …
The amount of biomedical literature is vast and growing quickly, and accurate text mining techniques could help researchers to efficiently extract useful information from the literature …