Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

SJ Helyar, J Hemmer‐Hansen… - Molecular ecology …, 2011 - Wiley Online Library
Recent improvements in the speed, cost and accuracy of next generation sequencing are
revolutionizing the discovery of single nucleotide polymorphisms (SNPs). SNPs are …

Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts

L Hauser, GR Carvalho - Fish and Fisheries, 2008 - Wiley Online Library
By providing new approaches to the investigation of demographic and evolutionary
dynamics of wild populations, molecular genetics has led to fundamental changes in our …

Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod ( Gadus morhua L.)

PR Berg, S Jentoft, B Star, KH Ring… - Genome biology and …, 2015 - academic.oup.com
How genomic selection enables species to adapt to divergent environments is a
fundamental question in ecology and evolution. We investigated the genomic signatures of …

Population genomics of marine fishes: identifying adaptive variation in space and time

EE Nielsen, J HEMMER‐HANSEN, PF Larsen… - Molecular …, 2009 - Wiley Online Library
Studies of adaptive evolution have experienced a recent revival in population genetics of
natural populations and there is currently much focus on identifying genomic signatures of …

Environmental selection on transcriptome‐derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)

MT Limborg, SJ Helyar, M De Bruyn… - Molecular …, 2012 - Wiley Online Library
High gene flow is considered the norm for most marine organisms and is expected to limit
their ability to adapt to local environments. Few studies have directly compared the patterns …

Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature

IR Bradbury, S Hubert, B Higgins… - … of the Royal …, 2010 - royalsocietypublishing.org
Despite the enormous economic and ecological importance of marine organisms, the spatial
scales of adaptation and biocomplexity remain largely unknown. Yet, the preservation of …

Outlier SNP markers reveal fine‐scale genetic structuring across European hake populations (Merluccius merluccius)

I Milano, M Babbucci, A Cariani… - Molecular …, 2014 - Wiley Online Library
Shallow population structure is generally reported for most marine fish and explained as a
consequence of high dispersal, connectivity and large population size. Targeted gene …

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

EE Nielsen, A Cariani, EM Aoidh, GE Maes… - Nature …, 2012 - nature.com
Abstract Illegal, Unreported and Unregulated fishing has had a major role in the
overexploitation of global fish populations. In response, international regulations have been …

Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua)

EE Nielsen, J Hemmer-Hansen, NA Poulsen… - BMC evolutionary …, 2009 - Springer
Background Marine fishes have been shown to display low levels of genetic structuring and
associated high levels of gene flow, suggesting shallow evolutionary trajectories and …

Application of single nucleotide polymorphisms to non‐model species: a technical review

MR Garvin, K Saitoh, AJ Gharrett - Molecular Ecology …, 2010 - Wiley Online Library
Single nucleotide polymorphisms (SNPs) have gained wide use in humans and model
species and are becoming the marker of choice for applications in other species …