Application of targeted mass spectrometry in bottom-up proteomics for systems biology research

NP Manes, A Nita-Lazar - Journal of proteomics, 2018 - Elsevier
The enormous diversity of proteoforms produces tremendous complexity within cellular
proteomes, facilitates intricate networks of molecular interactions, and constitutes a …

Peroxisome Proliferator‐Activated Receptors as a Therapeutic Target in Asthma

OY Kytikova, JM Perelman, TP Novgorodtseva… - PPAR …, 2020 - Wiley Online Library
The complexity of the pathogenetic mechanisms of the development of chronic inflammation
in asthma determines its heterogeneity and insufficient treatment effectiveness. Nuclear …

[HTML][HTML] LPS tolerance inhibits cellular respiration and induces global changes in the macrophage secretome

J Gillen, T Ondee, D Gurusamy, J Issara-Amphorn… - Biomolecules, 2021 - mdpi.com
Inflammatory response plays an essential role in the resolution of infections. However,
inflammation can be detrimental to an organism and cause irreparable damage. For …

[HTML][HTML] Titanium dioxide nanoparticles temporarily influence the sea urchin immunological state suppressing inflammatory-relate gene transcription and boosting …

A Alijagic, D Gaglio, E Napodano, R Russo… - Journal of hazardous …, 2020 - Elsevier
Abstract Titanium dioxide nanoparticles (TiO 2 NPs) are revolutionizing biomedicine due to
their potential application as diagnostic and therapeutic agents. However, the TiO 2 NP …

[HTML][HTML] Myristoylated, alanine-rich C-kinase substrate (MARCKS) regulates toll-like receptor 4 signaling in macrophages

J Issara-Amphorn, VH Sjoelund, M Smelkinson… - Scientific Reports, 2023 - nature.com
MARCKS (myristoylated alanine-rich C-kinase substrate) is a membrane-associated protein
expressed in many cell types, including macrophages. MARCKS is functionally implicated in …

Multi-omics strategies uncover host–pathogen interactions

MM Khan, O Ernst, NP Manes, BL Oyler… - ACS infectious …, 2019 - ACS Publications
With the success of the Human Genome Project, large-scale systemic projects became a
reality that enabled rapid development of the systems biology field. Systems biology …

Proteomics of host–bacterial interactions: new insights from dual perspectives

A Sukumaran, E Woroszchuk, T Ross… - Canadian Journal of …, 2021 - cdnsciencepub.com
Mass-spectrometry (MS)-based proteomics is a powerful and robust platform for studying the
interactions between biological systems during health and disease. Bacterial infections …

[HTML][HTML] Lipocalin-2 (Lcn-2) attenuates polymicrobial sepsis with LPS preconditioning (LPS tolerance) in FcGRIIb deficient lupus mice

T Ondee, J Gillen, P Visitchanakun, P Somparn… - Cells, 2019 - mdpi.com
In patients with active lupus, spontaneous endotoxemia and possibly tolerance to
lipopolysaccharide (LPS) is a potentially adverse complication. Similarly, previous reports …

[HTML][HTML] Exoproteomics for Better Understanding Pseudomonas aeruginosa Virulence

S Sauvage, J Hardouin - Toxins, 2020 - mdpi.com
Pseudomonas aeruginosa is the most common human opportunistic pathogen associated
with nosocomial diseases. In 2017, the World Health Organization has classified P …

Species-specific endotoxin stimulus determines toll-like receptor 4-and caspase 11-mediated pathway activation characteristics

O Ernst, MM Khan, BL Oyler, SH Yoon, J Sun, FY Lin… - Msystems, 2021 - Am Soc Microbiol
The innate immune system is the body's first line of defense against pathogens and its
protection against infectious diseases. On the surface of host myeloid cells, Toll-like receptor …