Effects of smoking on genome-wide DNA methylation profiles: A study of discordant and concordant monozygotic twin pairs

J van Dongen, G Willemsen, EJC de Geus… - Elife, 2023 - elifesciences.org
Background: Smoking-associated DNA methylation levels identified through epigenome-
wide association studies (EWASs) are generally ascribed to smoking-reactive mechanisms …

New insights into the (epi) genetics of twinning

J van Dongen, N Hubers, DI Boomsma - Human Reproduction, 2024 - academic.oup.com
Spontaneous dizygotic (DZ) twins, ie twins conceived without the use of ARTs, run in
families and their prevalence varies widely around the globe. In contrast, monozygotic (MZ) …

[HTML][HTML] A longitudinal and transancestral analysis of DNA methylation patterns and disease activity in lupus patients

P Coit, L Ortiz-Fernandez, EE Lewis, WJ McCune… - JCI insight, 2020 - ncbi.nlm.nih.gov
Epigenetic dysregulation is implicated in the pathogenesis of lupus. We performed a
longitudinal analysis to assess changes in DNA methylation in lupus neutrophils over 4 …

Integrative multi‐omics analysis of genomic, epigenomic, and metabolomics data leads to new insights for Attention‐Deficit/Hyperactivity Disorder

N Hubers, FA Hagenbeek, R Pool… - American Journal of …, 2024 - Wiley Online Library
The evolving field of multi‐omics combines data and provides methods for simultaneous
analysis across several omics levels. Here, we integrated genomics (transmitted and non …

Predicting complex traits and exposures from polygenic scores and blood and buccal DNA methylation profiles

VV Odintsova, V Rebattu, FA Hagenbeek… - Frontiers in …, 2021 - frontiersin.org
We examined the performance of methylation scores (MS) and polygenic scores (PGS) for
birth weight, BMI, prenatal maternal smoking exposure, and smoking status to assess the …

A multi-omics data analysis workflow packaged as a FAIR Digital Object

A Niehues, C de Visser, FA Hagenbeek… - …, 2024 - academic.oup.com
Background Applying good data management and FAIR (Findable, Accessible,
Interoperable, and Reusable) data principles in research projects can help disentangle …

Integrative multi-omics analysis of childhood aggressive behavior

FA Hagenbeek, J van Dongen, R Pool, PJ Roetman… - Behavior genetics, 2023 - Springer
This study introduces and illustrates the potential of an integrated multi-omics approach in
investigating the underlying biology of complex traits such as childhood aggressive …

DNA methylation signatures of breastfeeding in buccal cells collected in mid-childhood

VV Odintsova, FA Hagenbeek, M Suderman… - Nutrients, 2019 - mdpi.com
Breastfeeding has long-term benefits for children that may be mediated via the epigenome.
This pathway has been hypothesized, but the number of empirical studies in humans is …

Hypomethylation of miR-17-92 cluster in lupus T cells and no significant role for genetic factors in the lupus-associated DNA methylation signature

P Coit, X Roopnarinesingh… - Annals of the …, 2022 - ard.bmj.com
Objectives Lupus T cells demonstrate aberrant DNA methylation patterns dominated by
hypomethylation of interferon-regulated genes. The objective of this study was to identify …

Twisting the theory on the origin of human umbilical cord coiling featuring monozygotic twins

P Todtenhaupt, TB Kuipers, KL Dijkstra… - Life Science …, 2024 - life-science-alliance.org
The human umbilical cord (hUC) is the lifeline that connects the fetus to the mother.
Hypercoiling of the hUC is associated with pre-and perinatal morbidity and mortality. We …