CRISPR-based genome editing through the lens of DNA repair

TS Nambiar, L Baudrier, P Billon, A Ciccia - Molecular cell, 2022 - cell.com
Genome editing technologies operate by inducing site-specific DNA perturbations that are
resolved by cellular DNA repair pathways. Products of genome editors include DNA breaks …

Advances in genome editing through control of DNA repair pathways

CD Yeh, CD Richardson, JE Corn - Nature cell biology, 2019 - nature.com
Eukaryotic cells deploy overlapping repair pathways to resolve DNA damage.
Advancements in genome editing take advantage of these pathways to produce permanent …

Predicting the mutations generated by repair of Cas9-induced double-strand breaks

F Allen, L Crepaldi, C Alsinet, AJ Strong… - Nature …, 2019 - nature.com
The DNA mutation produced by cellular repair of a CRISPR–Cas9-generated double-strand
break determines its phenotypic effect. It is known that the mutational outcomes are not …

Unbiased detection of CRISPR off-targets in vivo using DISCOVER-Seq

B Wienert, SK Wyman, CD Richardson, CD Yeh… - Science, 2019 - science.org
CRISPR-Cas genome editing induces targeted DNA damage but can also affect off-target
sites. Current off-target discovery methods work using purified DNA or specific cellular …

Target-specific precision of CRISPR-mediated genome editing

AM Chakrabarti, T Henser-Brownhill, J Monserrat… - Molecular cell, 2019 - cell.com
The CRISPR-Cas9 system has successfully been adapted to edit the genome of various
organisms. However, our ability to predict the editing outcome at specific sites is limited …

Dynamics and competition of CRISPR–Cas9 ribonucleoproteins and AAV donor-mediated NHEJ, MMEJ and HDR editing

YW Fu, XY Dai, WT Wang, ZX Yang… - Nucleic acids …, 2021 - academic.oup.com
Investigations of CRISPR gene knockout editing profiles have contributed to enhanced
precision of editing outcomes. However, for homology-directed repair (HDR) in particular …

[HTML][HTML] A meta-analysis of reversion mutations in BRCA genes identifies signatures of DNA end-joining repair mechanisms driving therapy resistance

L Tobalina, J Armenia, E Irving, MJ O'Connor… - Annals of …, 2021 - Elsevier
Background Germline mutations in the BRCA1 or BRCA2 (BRCA) genes predispose to
hereditary breast and ovarian cancer and, mostly in the case of BRCA2, are also prevalent …

Simultaneous inhibition of DNA-PK and Polϴ improves integration efficiency and precision of genome editing

S Wimberger, N Akrap, M Firth, J Brengdahl… - Nature …, 2023 - nature.com
Genome editing, specifically CRISPR/Cas9 technology, has revolutionized biomedical
research and offers potential cures for genetic diseases. Despite rapid progress, low …

INDEL detection, the 'Achilles heel'of precise genome editing: a survey of methods for accurate profiling of gene editing induced indels

EP Bennett, BL Petersen, IE Johansen… - Nucleic acids …, 2020 - academic.oup.com
Advances in genome editing technologies have enabled manipulation of genomes at the
single base level. These technologies are based on programmable nucleases (PNs) that …

Deconvolution of complex DNA repair (DECODR): establishing a novel deconvolution algorithm for comprehensive analysis of CRISPR-edited sanger sequencing …

K Bloh, R Kanchana, P Bialk, K Banas, Z Zhang… - The CRISPR …, 2021 - liebertpub.com
During CRISPR-directed gene editing, multiple gene repair mechanisms interact to produce
a wide and largely unpredictable variety of sequence changes across an edited population …