Employing artificial intelligence to steer exascale workflows with colmena

L Ward, JG Pauloski, V Hayot-Sasson… - … Journal of High …, 2025 - journals.sagepub.com
Computational workflows are a common class of application on supercomputers, yet the
loosely coupled and heterogeneous nature of workflows often fails to take full advantage of …

Multi-objective latent space optimization of generative molecular design models

ANMN Abeer, NM Urban, MR Weil, FJ Alexander… - Patterns, 2024 - cell.com
Molecular design based on generative models, such as variational autoencoders (VAEs),
has become increasingly popular in recent years due to its efficiency for exploring high …

ChemoGraph: interactive visual exploration of the chemical space

B Kale, A Clyde, M Sun, A Ramanathan… - Computer Graphics …, 2023 - Wiley Online Library
Exploratory analysis of the chemical space is an important task in the field of
cheminformatics. For example, in drug discovery research, chemists investigate sets of …

Ai-coupled hpc workflows

S Jha, VR Pascuzzi, M Turilli - arXiv preprint arXiv:2208.11745, 2022 - arxiv.org
Increasingly, scientific discovery requires sophisticated and scalable workflows. Workflows
have become the``new applications,''wherein multi-scale computing campaigns comprise …

[图书][B] Artificial intelligence and high-performance computing for accelerating structure-based drug discovery

AR Clyde - 2022 - search.proquest.com
Traditional techniques for discovering novel drugs are too slow for 21st challenges, from
precision oncology to emerging global pandemics. The COVID-19 Pandemic demonstrated …

An Effective Pipeline for Training Variational Autoencoders for Synthesizable and Optimized Molecular Design

FH Mozumder, BJ Yoon - IEEE Access, 2024 - ieeexplore.ieee.org
Variational auto-encoders (VAE) for molecular design and optimization have gained
popularity due to their efficiency in exploring high-dimensional molecular space to identify …

Enhancing Generative Molecular Design via Uncertainty-guided Fine-tuning of Variational Autoencoders

ANM Abeer, S Jantre, NM Urban, BJ Yoon - arXiv preprint arXiv …, 2024 - arxiv.org
In recent years, deep generative models have been successfully adopted for various
molecular design tasks, particularly in the life and material sciences. A critical challenge for …

Scalable Artificial Intelligence for Science: Perspectives, Methods and Exemplars

W Brewer, A Kashi, S Dash, A Tsaris, J Yin… - arXiv preprint arXiv …, 2024 - arxiv.org
In a post-ChatGPT world, this paper explores the potential of leveraging scalable artificial
intelligence for scientific discovery. We propose that scaling up artificial intelligence on high …

Optimal high-throughput virtual screening pipeline for efficient selection of redox-active organic materials

HM Woo, O Allam, J Chen, SS Jang, BJ Yoon - Iscience, 2023 - cell.com
As global interest in renewable energy continues to increase, there has been a pressing
need for developing novel energy storage devices based on organic electrode materials that …

Decision-Making Under Uncertainty for Multi-stage Pipelines: Simulation Studies to Benchmark Screening Strategies

KG Reyes, J Liu, CJD Vargas - JOM, 2022 - Springer
Multi-stage screening pipelines are ubiquitous throughout experimental and computational
science. Much of the effort in developing screening pipelines focuses on improving …