The reproducibility of experiments has been a long standing impediment for further scientific progress. Computational methods have been instrumental in drug discovery efforts owing to …
L Schmiester, Y Schälte, FT Bergmann… - PLoS computational …, 2021 - journals.plos.org
Reproducibility and reusability of the results of data-based modeling studies are essential. Yet, there has been—so far—no broadly supported format for the specification of parameter …
B van Sluijs, RJM Maas, AJ van der Linden… - Nature …, 2022 - nature.com
Cell-free protein synthesis has been widely used as a “breadboard” for design of synthetic genetic networks. However, due to a severe lack of modularity, forward engineering of …
C Welsh, J Xu, L Smith, M König, K Choi… - …, 2023 - academic.oup.com
Motivation This article presents libRoadRunner 2.0, an extensible, high-performance, cross- platform, open-source software library for the simulation and analysis of models expressed …
It is widely acknowledged that the construction of large-scale dynamic models in systems biology requires complex modelling problems to be broken up into more manageable …
Periodic gene expression dynamics are key to cell and organism physiology. Studies of oscillatory expression have focused on networks with intuitive regulatory negative feedback …
CRISPR-Cas transcriptional circuits hold great promise as platforms for engineering metabolic networks and information processing circuits. Historically, prokaryotic CRISPR …
Abstract BioUML (homepage: http://www. biouml. org, main public server: https://ict. biouml. org) is a web-based integrated environment (platform) for systems biology and the analysis …
Highlights•Synthetic biology aims to apply engineering principles in biology.•Insufficient part libraries, standards, and software are challenges to the field.•Working on the challenges will …