Regulation and signaling pathways in cancer stem cells: implications for targeted therapy for cancer

Z Zeng, M Fu, Y Hu, Y Wei, X Wei, M Luo - Molecular Cancer, 2023 - Springer
Cancer stem cells (CSCs), initially identified in leukemia in 1994, constitute a distinct subset
of tumor cells characterized by surface markers such as CD133, CD44, and ALDH. Their …

Targeted RNA editing: novel tools to study post-transcriptional regulation

W Xu, J Biswas, RH Singer, M Rosbash - Molecular cell, 2022 - cell.com
RNA binding proteins (RBPs) regulate nearly all post-transcriptional processes within cells.
To fully understand RBP function, it is essential to identify their in vivo targets. Standard …

Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes

KW Brannan, IA Chaim, RJ Marina, BA Yee… - Nature …, 2021 - nature.com
RNA-binding proteins (RBPs) are critical regulators of gene expression and RNA processing
that are required for gene function. Yet the dynamics of RBP regulation in single cells is …

[HTML][HTML] N6-Methyladenosine on mRNA facilitates a phase-separated nuclear body that suppresses myeloid leukemic differentiation

Y Cheng, W Xie, BF Pickering, KL Chu, AM Savino… - Cancer cell, 2021 - cell.com
Summary N 6-Methyladenosine (m 6 A) on mRNAs mediates different biological processes
and its dysregulation contributes to tumorigenesis. How m 6 A dictates its diverse molecular …

Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing

Y Xiao, YM Chen, Z Zou, C Ye, X Dou, J Wu, C Liu… - Nature …, 2024 - nature.com
RNA-binding proteins (RBPs) regulate diverse cellular processes by dynamically interacting
with RNA targets. However, effective methods to capture both stable and transient …

SON is an essential m6A target for hematopoietic stem cell fate

H Luo, M Cortés-López, CL Tam, M Xiao, I Wakiro… - Cell Stem Cell, 2023 - cell.com
Stem cells regulate their self-renewal and differentiation fate outcomes through both
symmetric and asymmetric divisions. m 6 A RNA methylation controls symmetric commitment …

Improving bulk RNA-seq classification by transferring gene signature from single cells in acute myeloid leukemia

R Wang, X Zheng, J Wang, S Wan… - Briefings in …, 2022 - academic.oup.com
The advances in single-cell RNA sequencing (scRNA-seq) technologies enable the
characterization of transcriptomic profiles at the cellular level and demonstrate great promise …

Transcriptome reprogramming through alternative splicing triggered by apigenin drives cell death in triple-negative breast cancer

M Sudhakaran, TG Navarrete, K Mejía-Guerra… - Cell Death & …, 2023 - nature.com
Triple-negative breast cancer (TNBC) is characterized by its aggressiveness and resistance
to cancer-specific transcriptome alterations. Alternative splicing (AS) is a major contributor to …

RNA binding protein SYNCRIP maintains proteostasis and self-renewal of hematopoietic stem and progenitor cells

F Herrejon Chavez, H Luo, P Cifani, A Pine… - Nature …, 2023 - nature.com
Tissue homeostasis is maintained after stress by engaging and activating the hematopoietic
stem and progenitor compartments in the blood. Hematopoietic stem cells (HSCs) are …

Comparison of TRIBE and STAMP for identifying targets of RNA binding proteins in human and Drosophila cells

KC Abruzzi, C Ratner, M Rosbash - Rna, 2023 - rnajournal.cshlp.org
RNA binding proteins (RBPs) perform a myriad of functions and are implicated in numerous
neurological diseases. To identify the targets of RBPs in small numbers of cells, we …