Comparative protein structure modeling of genes and genomes

MA Martí-Renom, AC Stuart, A Fiser… - Annual review of …, 2000 - annualreviews.org
▪ Abstract Comparative modeling predicts the three-dimensional structure of a given protein
sequence (target) based primarily on its alignment to one or more proteins of known …

Variation matters: TLR structure and species-specific pathogen recognition

D Werling, OC Jann, V Offord, EJ Glass, TJ Coffey - Trends in immunology, 2009 - cell.com
Toll-like receptors (TLRs) are a family of pattern recognition receptors that are an important
link between innate and adaptive immunity. Many vaccines incorporate ligands for TLRs as …

Protein structure modeling with MODELLER

B Webb, A Sali - Functional genomics: Methods and protocols, 2017 - Springer
Genome sequencing projects have resulted in a rapid increase in the number of known
protein sequences. In contrast, only about one-hundredth of these sequences have been …

Comparative protein structure modeling using MODELLER

B Webb, A Sali - Current protocols in bioinformatics, 2016 - Wiley Online Library
Comparative protein structure modeling predicts the three‐dimensional structure of a given
protein sequence (target) based primarily on its alignment to one or more proteins of known …

Comparative protein modelling by satisfaction of spatial restraints

A Šali, TL Blundell - Journal of molecular biology, 1993 - Elsevier
We describe a comparative protein modelling method designed to find the most probable
structure for a sequence given its alignment with related structures. The three dimensional …

Modeller: generation and refinement of homology-based protein structure models

A Fiser, A Šali - Methods in enzymology, 2003 - Elsevier
Publisher Summary Functional characterization of a protein sequence is one of the most
frequent problems in biology. This task is usually facilitated by accurate three-dimensional …

[图书][B] Protein structure modeling with MODELLER

B Webb, A Sali - 2021 - Springer
Genome sequencing projects have resulted in a rapid increase in the number of known
protein sequences. In contrast, only about one-hundredth of these sequences have been …

Gigantism and Acromegaly Due to Xq26 Microduplications and GPR101 Mutation

G Trivellin, AF Daly, FR Faucz, B Yuan… - … England Journal of …, 2014 - Mass Medical Soc
Background Increased secretion of growth hormone leads to gigantism in children and
acromegaly in adults; the genetic causes of gigantism and acromegaly are poorly …

Evaluation of comparative protein modeling by MODELLER

A Šali, L Potterton, F Yuan… - Proteins: structure …, 1995 - Wiley Online Library
We evaluate 3D models of human nucleoside diphosphate kinase, mouse cellular retinoic
acid binding protein I, and human eosinophil neurotoxin that were calculated by Modeller, a …

Protein structure modeling with MODELLER

N Eswar, D Eramian, B Webb, MY Shen… - Structural proteomics: high …, 2008 - Springer
Genome sequencing projects have resulted in a rapid increase in the number of known
protein sequences. In contrast, only about one-hundredth of these sequences have been …