Cross-linking mass spectrometry for investigating protein conformations and protein–protein interactions─ a method for all seasons

L Piersimoni, PL Kastritis, C Arlt, A Sinz - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) has become one of the key technologies of structural biology. In this
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …

[HTML][HTML] The chemistry of snake venom and its medicinal potential

AL Oliveira, MF Viegas, SL da Silva… - Nature Reviews …, 2022 - nature.com
The fascination and fear of snakes dates back to time immemorial, with the first scientific
treatise on snakebite envenoming, the Brooklyn Medical Papyrus, dating from ancient Egypt …

UCSF ChimeraX: Tools for structure building and analysis

EC Meng, TD Goddard, EF Pettersen… - Protein …, 2023 - Wiley Online Library
Advances in computational tools for atomic model building are leading to accurate models of
large molecular assemblies seen in electron microscopy, often at challenging resolutions of …

Structural biology in the clouds: the WeNMR-EOSC ecosystem

RV Honorato, PI Koukos, B Jiménez-García… - Frontiers in molecular …, 2021 - frontiersin.org
Structural biology aims at characterizing the structural and dynamic properties of biological
macromolecules at atomic details. Gaining insight into three dimensional structures of …

[HTML][HTML] Evidence for a mouse origin of the SARS-CoV-2 Omicron variant

C Wei, KJ Shan, W Wang, S Zhang, Q Huan… - Journal of genetics and …, 2021 - Elsevier
The rapid accumulation of mutations in the SARS-CoV-2 Omicron variant that enabled its
outbreak raises questions as to whether its proximal origin occurred in humans or another …

Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search

P Bryant, G Pozzati, W Zhu, A Shenoy… - Nature …, 2022 - nature.com
AlphaFold can predict the structure of single-and multiple-chain proteins with very high
accuracy. However, the accuracy decreases with the number of chains, and the available …

The HDOCK server for integrated protein–protein docking

Y Yan, H Tao, J He, SY Huang - Nature protocols, 2020 - nature.com
Abstract The HDOCK server (http://hdock. phys. hust. edu. cn/) is a highly integrated suite of
homology search, template-based modeling, structure prediction, macromolecular docking …

Teixobactin kills bacteria by a two-pronged attack on the cell envelope

R Shukla, F Lavore, S Maity, MGN Derks, CR Jones… - Nature, 2022 - nature.com
Antibiotics that use novel mechanisms are needed to combat antimicrobial resistance,–.
Teixobactin represents a new class of antibiotics with a unique chemical scaffold and lack of …

[HTML][HTML] ATG9A and ATG2A form a heteromeric complex essential for autophagosome formation

AR van Vliet, GN Chiduza, SL Maslen, VE Pye, D Joshi… - Molecular cell, 2022 - cell.com
Summary ATG9A and ATG2A are essential core members of the autophagy machinery.
ATG9A is a lipid scramblase that allows equilibration of lipids across a membrane bilayer …

Macromolecular modeling and design in Rosetta: recent methods and frameworks

JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle… - Nature …, 2020 - nature.com
The Rosetta software for macromolecular modeling, docking and design is extensively used
in laboratories worldwide. During two decades of development by a community of …