[HTML][HTML] Future perspectives of wastewater-based epidemiology: monitoring infectious disease spread and resistance to the community level

N Sims, B Kasprzyk-Hordern - Environment international, 2020 - Elsevier
Infectious diseases are acknowledged as one of the most critical threats to global public
health today. Climate change, unprecedented population growth with accelerated rates of …

The potential of wastewater-based epidemiology as surveillance and early warning of infectious disease outbreaks

K Mao, K Zhang, W Du, W Ali, X Feng… - Current Opinion in …, 2020 - Elsevier
Infectious diseases caused by pathogens have become one of the main threats to public
health. Efficient monitoring of infectious disease transmission is critical to prevent and …

Next generation sequencing approaches to evaluate water and wastewater quality

E Garner, BC Davis, E Milligan, MF Blair, I Keenum… - Water Research, 2021 - Elsevier
The emergence of next generation sequencing (NGS) is revolutionizing the potential to
address complex microbiological challenges in the water industry. NGS technologies can …

Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect …

M Gand, B Bloemen, K Vanneste, NHC Roosens… - BMC genomics, 2023 - Springer
Abstract Background Oxford Nanopore Technologies (ONT) offers an accessible platform for
long-read sequencing, which improves the reconstruction of genomes and helps to resolve …

Molecular methods for pathogenic bacteria detection and recent advances in wastewater analysis

S Zhang, X Li, J Wu, L Coin, J O'brien, F Hai, G Jiang - Water, 2021 - mdpi.com
With increasing concerns about public health and the development of molecular techniques,
new detection tools and the combination of existing approaches have increased the abilities …

Novel virus identification through metagenomics: a systematic review

C Bassi, P Guerriero, M Pierantoni, E Callegari… - Life, 2022 - mdpi.com
Metagenomic Next Generation Sequencing (mNGS) allows the evaluation of complex
microbial communities, avoiding isolation and cultivation of each microbial species, and …

The standardisation of the approach to metagenomic human gut analysis: from sample collection to microbiome profiling

N Szóstak, A Szymanek, J Havránek, K Tomela… - Scientific Reports, 2022 - nature.com
In recent years, the number of metagenomic studies increased significantly. Wide range of
factors, including the tremendous community complexity and variability, is contributing to the …

Distinct temporal succession of bacterial communities in early marine biofilms in a Portuguese Atlantic Port

JT Antunes, AGG Sousa, J Azevedo, A Rego… - Frontiers in …, 2020 - frontiersin.org
Marine biofilms are known to influence the corrosion of metal surfaces in the marine
environment. Despite some recent research, the succession of bacterial communities …

Evaluation of DNA extraction methods and direct PCR in metabarcoding of mock and marine bacterial communities

I Stojan, Ž Trumbić, I Lepen Pleić, D Šantić - Frontiers in microbiology, 2023 - frontiersin.org
Recent advances in new molecular biology methods and next-generation sequencing
(NGS) technologies have revolutionized metabarcoding studies investigating complex …

Benchmarking DNA isolation kits used in analyses of the urinary microbiome

L Karstens, NY Siddiqui, T Zaza, A Barstad… - Scientific Reports, 2021 - nature.com
The urinary microbiome has been increasingly characterized using next-generation
sequencing. However, many of the technical methods have not yet been specifically …