Here we present Tellurium, a Python-based environment for model building, simulation, and
analysis that facilitates reproducibility of models in systems and synthetic biology. Tellurium …

The SynBioHub repository (https://synbiohub. org) is an open-source software project that
facilitates the sharing of information about engineered biological systems. SynBioHub …

The Synthetic Biology Open Language (SBOL) is a community-developed data standard that
allows knowledge about biological designs to be captured using a machine-tractable …

Specifications of standards in systems and synthetic biology: status and developments in 2020
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Synthetic Biology is defined as the application of engineering principles to biology. It aims to
increase the speed, ease and predictability with which desirable changes and novel traits …

As the Synthetic Biology Open Language (SBOL) data and visual standards gain
acceptance for describing genetic designs in a detailed and reproducible way, there is an …

Computational models are essential to engineer predictable biological systems and to scale
up this process for complex systems. Computational modeling often requires expert …

This paper presents Leaf LIMS, a flexible laboratory information management system (LIMS)
designed to address the complexity of synthetic biology workflows. At the project's inception …

Background: Systems biology and network modeling represent, nowadays, the hallmark
approaches for the development of predictive and targeted-treatment based precision …

This paper presents a new validation and conversion utility for the Synthetic Biology Open
Language (SBOL). This utility can be accessed directly in software using the libSBOLj …