Plant small RNAs: their biogenesis, regulatory roles, and functions

J Zhan, BC Meyers - Annual Review of Plant Biology, 2023 - annualreviews.org
Plant cells accumulate small RNA molecules that regulate plant development, genome
stability, and environmental responses. These small RNAs fall into three major classes …

Epigenome plasticity in plants

JPB Lloyd, R Lister - Nature Reviews Genetics, 2022 - nature.com
Plant intra-individual and inter-individual variation can be determined by the epigenome, a
set of covalent modifications of DNA and chromatin that can alter genome structure and …

DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development

L He, H Huang, M Bradai, C Zhao, Y You, J Ma… - Nature …, 2022 - nature.com
A contribution of DNA methylation to defense against invading nucleic acids and
maintenance of genome integrity is uncontested; however, our understanding of the extent …

RNA-directed DNA methylation

RM Erdmann, CL Picard - PLoS genetics, 2020 - journals.plos.org
RNA-directed DNA methylation (RdDM) is a biological process in which non-coding RNA
molecules direct the addition of DNA methylation to specific DNA sequences. The RdDM …

Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems

A Papikian, W Liu, J Gallego-Bartolomé… - Nature …, 2019 - nature.com
Understanding genomic functions requires site-specific manipulation of loci via efficient
protein effector targeting systems. However, few approaches for targeted manipulation of the …

Targeted DNA demethylation of the Arabidopsis genome using the human TET1 catalytic domain

J Gallego-Bartolomé, J Gardiner… - Proceedings of the …, 2018 - National Acad Sciences
DNA methylation is an important epigenetic modification involved in gene regulation and
transposable element silencing. Changes in DNA methylation can be heritable and, thus …

A DNA methylation reader complex that enhances gene transcription

CJ Harris, M Scheibe, SP Wongpalee, W Liu… - Science, 2018 - science.org
DNA methylation generally functions as a repressive transcriptional signal, but it is also
known to activate gene expression. In either case, the downstream factors remain largely …

Epigenetic regulation in plants

CS Pikaard, OM Scheid - Cold Spring Harbor …, 2014 - cshperspectives.cshlp.org
The study of epigenetics in plants has a long and rich history, from initial descriptions of non-
Mendelian gene behaviors to seminal discoveries of chromatin-modifying proteins and …

Epigenetics for crop improvement in times of global change

I Kakoulidou, EV Avramidou, M Baránek… - Biology, 2021 - mdpi.com
Simple Summary Research on plant epigenetics aims to understand how endogenous,
biotic, and abiotic factors regulate plant development and growth independent of changes in …

Transgenerational epigenetic instability is a source of novel methylation variants

RJ Schmitz, MD Schultz, MG Lewsey, RC O'Malley… - Science, 2011 - science.org
Epigenetic information, which may affect an organism's phenotype, can be stored and stably
inherited in the form of cytosine DNA methylation. Changes in DNA methylation can produce …