The growing and glowing toolbox of fluorescent and photoactive proteins

EA Rodriguez, RE Campbell, JY Lin, MZ Lin… - Trends in biochemical …, 2017 - cell.com
Over the past 20 years, protein engineering has been extensively used to improve and
modify the fundamental properties of fluorescent proteins (FPs) with the goal of adapting …

Theory and simulation of the ultrafast double-bond isomerization of biological chromophores

S Gozem, HL Luk, I Schapiro, M Olivucci - Chemical reviews, 2017 - ACS Publications
Ultrafast processes in light-absorbing proteins have been implicated in the primary step in
the light-to-energy conversion and the initialization of photoresponsive biological functions …

Nuclear and cytoplasmic spatial protein quality control is coordinated by nuclear–vacuolar junctions and perinuclear ESCRT

EM Sontag, F Morales-Polanco, JH Chen… - Nature Cell …, 2023 - nature.com
Effective protein quality control (PQC), essential for cellular health, relies on spatial
sequestration of misfolded proteins into defined inclusions. Here we reveal the coordination …

[HTML][HTML] Whole-body imaging with single-cell resolution by tissue decolorization

K Tainaka, SI Kubota, TQ Suyama, EA Susaki, D Perrin… - Cell, 2014 - cell.com
The development of whole-body imaging at single-cell resolution enables system-level
approaches to studying cellular circuits in organisms. Previous clearing methods focused on …

Time-dependent density-functional theory: concepts and applications

CA Ullrich - 2011 - books.google.com
Time-dependent density-functional theory (TDDFT) describes the quantum dynamics of
interacting electronic many-body systems formally exactly and in a practical and efficient …

[图书][B] Principles of fluorescence spectroscopy

JR Lakowicz - 2006 - Springer
The success of fluorescence experiments requires attention to experimental details and an
understanding of the instrumentation. There are also many potential artifacts that can distort …

[HTML][HTML] Whole-body and whole-organ clearing and imaging techniques with single-cell resolution: toward organism-level systems biology in mammals

EA Susaki, HR Ueda - Cell chemical biology, 2016 - cell.com
Organism-level systems biology aims to identify, analyze, control and design cellular circuits
in organisms. Many experimental and computational approaches have been developed …

Photoinduced chemistry in fluorescent proteins: curse or blessing?

A Acharya, AM Bogdanov, BL Grigorenko… - Chemical …, 2017 - ACS Publications
Photoinduced reactions play an important role in the photocycle of fluorescent proteins from
the green fluorescent protein (GFP) family. Among such processes are photoisomerization …

[HTML][HTML] Lights, fiber, action! A primer on in vivo fiber photometry

EH Simpson, T Akam, T Patriarchi, M Blanco-Pozo… - Neuron, 2024 - cell.com
Fiber photometry is a key technique for characterizing brain-behavior relationships in vivo.
Initially, it was primarily used to report calcium dynamics as a proxy for neural activity via …

Studying protein dynamics in living cells

J Lippincott-Schwartz, E Snapp… - Nature reviews Molecular …, 2001 - nature.com
Since the advent of the green fluorescent protein, the subcellular localization, mobility,
transport routes and binding interactions of proteins can be studied in living cells. Live cell …