Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use

JF Atkins, G Loughran, PR Bhatt, AE Firth… - Nucleic acids …, 2016 - academic.oup.com
Genetic decoding is not 'frozen'as was earlier thought, but dynamic. One facet of this is
frameshifting that often results in synthesis of a C-terminal region encoded by a new frame …

Decoding the genome: a modified view

PF Agris - Nucleic acids research, 2004 - academic.oup.com
Transfer RNA's role in decoding the genome is critical to the accuracy and efficiency of
protein synthesis. Though modified nucleosides were identified in RNA 50 years ago, only …

Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region

CC Burns, J Shaw, R Campagnoli, J Jorba… - Journal of …, 2006 - Am Soc Microbiol
We replaced degenerate codons for nine amino acids within the capsid region of the Sabin
type 2 oral poliovirus vaccine strain with corresponding nonpreferred synonymous codons …

Selective charging of tRNA isoacceptors induced by amino‐acid starvation

KA Dittmar, MA Sørensen, J Elf, M Ehrenberg… - EMBO reports, 2005 - embopress.org
Aminoacylated (charged) transfer RNA isoacceptors read different messenger RNA codons
for the same amino acid. The concentration of an isoacceptor and its charged fraction are …

[图书][B] Structural aspects of protein synthesis

A Liljas, M Ehrenberg - 2013 - books.google.com
This highly illustrated book provides an up-to-date description of the structure and function of
the translation system including ribosomes, tRNAs, translation factors, antibiotics and …

A novel antigen capture ELISA for the specific detection of IgG antibodies to elephant endotheliotropic herpes virus

PB Van den Doel, VR Prieto… - BMC veterinary …, 2015 - Springer
Background Elephants are classified as critically endangered animals by the International
Union for Conservation of Species (IUCN). Elephant endotheliotropic herpesvirus (EEHV) …

Influences on gene expression in vivo by a Shine–Dalgarno sequence

H Jin, Q Zhao, EI Gonzalez de Valdivia… - Molecular …, 2006 - Wiley Online Library
Summary The Shine–Dalgarno (SD+: 5′‐AAGGAGG‐3′) sequence anchors the mRNA by
base pairing to the 16S rRNA in the small ribosomal subunit during translation initiation. We …

Over expression of a tRNALeu isoacceptor changes charging pattern of leucine tRNAs and reveals new codon reading

MA Sørensen, J Elf, E Bouakaz, T Tenson… - Journal of molecular …, 2005 - Elsevier
During mRNA translation, synonymous codons for one amino acid are often read by different
isoaccepting tRNAs. The theory of selective tRNA charging predicts greatly varying …

Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing

IV Antonov, S O'Loughlin, AN Gorohovski… - RNA biology, 2023 - Taylor & Francis
In Streptomyces species, the cell cycle involves a switch from an early and vegetative state
to a later phase where secondary products including antibiotics are synthesized, aerial …

[HTML][HTML] YeATS-a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in …

S Chakraborty, M Britton, J Wegrzyn, T Butterfield… - …, 2015 - ncbi.nlm.nih.gov
The transcriptome provides a functional footprint of the genome by enumerating the
molecular components of cells and tissues. The field of transcript discovery has been …