A complete electron microscopy volume of the brain of adult Drosophila melanogaster

Z Zheng, JS Lauritzen, E Perlman, CG Robinson… - Cell, 2018 - cell.com
Drosophila melanogaster has a rich repertoire of innate and learned behaviors. Its 100,000-
neuron brain is a large but tractable target for comprehensive neural circuit mapping. Only …

Functional connectomics spanning multiple areas of mouse visual cortex

MICrONS Consortium, JA Bae, M Baptiste, CA Bishop… - BioRxiv, 2021 - biorxiv.org
To understand the brain we must relate neurons' functional responses to the circuit
architecture that shapes them. Here, we present a large functional connectomics dataset …

Whole-brain serial-section electron microscopy in larval zebrafish

DGC Hildebrand, M Cicconet, RM Torres, W Choi… - Nature, 2017 - nature.com
High-resolution serial-section electron microscopy (ssEM) makes it possible to investigate
the dense meshwork of axons, dendrites, and synapses that form neuronal circuits …

Convolutional nets for reconstructing neural circuits from brain images acquired by serial section electron microscopy

K Lee, N Turner, T Macrina, J Wu, R Lu… - Current opinion in …, 2019 - Elsevier
Neural circuits can be reconstructed from brain images acquired by serial section electron
microscopy. Image analysis has been performed by manual labor for half a century, and …

Fusionnet: A deep fully residual convolutional neural network for image segmentation in connectomics

TM Quan, DGC Hildebrand, WK Jeong - Frontiers in Computer …, 2021 - frontiersin.org
Cellular-resolution connectomics is an ambitious research direction with the goal of
generating comprehensive brain connectivity maps using high-throughput, nano-scale …

How innovations in methodology offer new prospects for volume electron microscopy

AJ Kievits, R Lane, EC Carroll… - Journal of …, 2022 - Wiley Online Library
Detailed knowledge of biological structure has been key in understanding biology at several
levels of organisation, from organs to cells and proteins. Volume electron microscopy …

Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex

CM Schneider-Mizell, AL Bodor, D Brittain… - …, 2024 - pmc.ncbi.nlm.nih.gov
Mammalian cortex features a vast diversity of neuronal cell types, each with characteristic
anatomical, molecular and functional properties. Synaptic connectivity powerfully shapes …

A time-dependent diffusion MRI signature of axon caliber variations and beading

HH Lee, A Papaioannou, SL Kim, DS Novikov… - Communications …, 2020 - nature.com
MRI provides a unique non-invasive window into the brain, yet is limited to millimeter
resolution, orders of magnitude coarser than cell dimensions. Here, we show that diffusion …

Automated reconstruction of a serial-section EM Drosophila brain with flood-filling networks and local realignment

PH Li, LF Lindsey, M Januszewski, M Tyka… - Microscopy and …, 2019 - cambridge.org
Large-scale connectomic reconstruction of neural circuitry at single-synapse resolution is an
attractive target for improving understanding of the nervous system in health and disease …

An individual interneuron participates in many kinds of inhibition and innervates much of the mouse visual thalamus

JL Morgan, JW Lichtman - Neuron, 2020 - cell.com
One way to assess a neuron's function is to describe all its inputs and outputs. With this goal
in mind, we used serial section electron microscopy to map 899 synaptic inputs and 623 …