Complex network approaches to nonlinear time series analysis

Y Zou, RV Donner, N Marwan, JF Donges, J Kurths - Physics Reports, 2019 - Elsevier
In the last decade, there has been a growing body of literature addressing the utilization of
complex network methods for the characterization of dynamical systems based on time …

Stochastic thermodynamics, fluctuation theorems and molecular machines

U Seifert - Reports on progress in physics, 2012 - iopscience.iop.org
Stochastic thermodynamics as reviewed here systematically provides a framework for
extending the notions of classical thermodynamics such as work, heat and entropy …

Thermodynamic inference in partially accessible Markov networks: a unifying perspective from transition-based waiting time distributions

J Van der Meer, B Ertel, U Seifert - Physical Review X, 2022 - APS
The inference of thermodynamic quantities from the description of an only partially
accessible physical system is a central challenge in stochastic thermodynamics. A common …

Irreversibility in active matter systems: Fluctuation theorem and mutual information

L Dabelow, S Bo, R Eichhorn - Physical Review X, 2019 - APS
We consider a Brownian particle which, in addition to being in contact with a thermal bath, is
driven by fluctuating forces which stem from active processes in the system, such as self …

What to learn from a few visible transitions' statistics?

PE Harunari, A Dutta, M Polettini, É Roldán - Physical Review X, 2022 - APS
Interpreting partial information collected from systems subject to noise is a key problem
across scientific disciplines. Theoretical frameworks often focus on the dynamics of variables …

From stochastic thermodynamics to thermodynamic inference

U Seifert - Annual Review of Condensed Matter Physics, 2019 - annualreviews.org
For a large class of nonequilibrium systems, thermodynamic notions like work, heat, and, in
particular, entropy production can be identified on the level of fluctuating dynamical …

Estimating entropy production from waiting time distributions

DJ Skinner, J Dunkel - Physical review letters, 2021 - APS
Living systems operate far from thermal equilibrium by converting the chemical potential of
ATP into mechanical work to achieve growth, replication, or locomotion. Given time series …

Thermodynamic uncertainty relation for time-dependent driving

T Koyuk, U Seifert - Physical Review Letters, 2020 - APS
Thermodynamic uncertainty relations yield a lower bound on entropy production in terms of
the mean and fluctuations of a current. We derive their general form for systems under …

Universal bounds on current fluctuations

P Pietzonka, AC Barato, U Seifert - Physical Review E, 2016 - APS
For current fluctuations in nonequilibrium steady states of Markovian processes, we derive
four different universal bounds valid beyond the Gaussian regime. Different variants of these …

Improved bounds on entropy production in living systems

DJ Skinner, J Dunkel - … of the National Academy of Sciences, 2021 - National Acad Sciences
Living systems maintain or increase local order by working against the second law of
thermodynamics. Thermodynamic consistency is restored as they consume free energy …