Alternative tumour-specific antigens

CC Smith, SR Selitsky, S Chai, PM Armistead… - Nature Reviews …, 2019 - nature.com
The study of tumour-specific antigens (TSAs) as targets for antitumour therapies has
accelerated within the past decade. The most commonly studied class of TSAs are those …

Neoantigens: promising targets for cancer therapy

N Xie, G Shen, W Gao, Z Huang, C Huang… - Signal transduction and …, 2023 - nature.com
Recent advances in neoantigen research have accelerated the development and regulatory
approval of tumor immunotherapies, including cancer vaccines, adoptive cell therapy and …

Genome-wide association analyses define pathogenic signaling pathways and prioritize drug targets for IgA nephropathy

K Kiryluk, E Sanchez-Rodriguez, XJ Zhou, F Zanoni… - Nature …, 2023 - nature.com
IgA nephropathy (IgAN) is a progressive form of kidney disease defined by glomerular
deposition of IgA. Here we performed a genome-wide association study of 10,146 kidney …

Therapeutic cancer vaccines: advancements, challenges, and prospects

T Fan, M Zhang, J Yang, Z Zhu, W Cao… - Signal Transduction and …, 2023 - nature.com
With the development and regulatory approval of immune checkpoint inhibitors and adoptive
cell therapies, cancer immunotherapy has undergone a profound transformation over the …

Technological advances in cancer immunity: from immunogenomics to single-cell analysis and artificial intelligence

Y Xu, GH Su, D Ma, Y Xiao, ZM Shao… - Signal Transduction and …, 2021 - nature.com
Immunotherapies play critical roles in cancer treatment. However, given that only a few
patients respond to immune checkpoint blockades and other immunotherapeutic strategies …

Best practices for bioinformatic characterization of neoantigens for clinical utility

MM Richters, H Xia, KM Campbell, WE Gillanders… - Genome medicine, 2019 - Springer
Neoantigens are newly formed peptides created from somatic mutations that are capable of
inducing tumor-specific T cell recognition. Recently, researchers and clinicians have …

Current understanding of an emerging role of HLA-DRB1 gene in rheumatoid arthritis–from research to clinical practice

T Wysocki, M Olesińska, A Paradowska-Gorycka - Cells, 2020 - mdpi.com
Rheumatoid arthritis (RA) is an autoimmune disease with an unclear pathogenic
mechanism. However, it has been proven that the key underlying risk factor is a genetic …

Applying next-generation sequencing platforms for pharmacogenomic testing in clinical practice

A Tafazoli, HJ Guchelaar, W Miltyk… - Frontiers in …, 2021 - frontiersin.org
Pharmacogenomics (PGx) studies the use of genetic data to optimize drug therapy.
Numerous clinical centers have commenced implementing pharmacogenetic tests in clinical …

Bioinformatics strategies, challenges, and opportunities for next generation sequencing-based HLA genotyping

S Klasberg, V Surendranath, V Lange… - Transfusion Medicine …, 2019 - karger.com
The advent of next generation sequencing (NGS) has altered the face of genotyping the
human leukocyte antigen (HLA) system in clinical, stem cell donor registry, and research …

Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

A Claeys, P Merseburger, J Staut, K Marchal… - BMC genomics, 2023 - Springer
Abstract Background The Human Leukocyte Antigen (HLA) genes are a group of highly
polymorphic genes that are located in the Major Histocompatibility Complex (MHC) region …