Context-specific regulation and function of mRNA alternative polyadenylation

S Mitschka, C Mayr - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Alternative cleavage and polyadenylation (APA) is a widespread mechanism to generate
mRNA isoforms with alternative 3′ untranslated regions (UTRs). The expression of …

Extracellular CIRP (eCIRP) and inflammation

M Aziz, M Brenner, P Wang - Journal of leukocyte biology, 2019 - academic.oup.com
Cold-inducible RNA-binding protein (CIRP) was discovered 2 decades ago while studying
the mechanism of cold stress adaptation in mammals. Since then, the role of intracellular …

starBase v2. 0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

JH Li, S Liu, H Zhou, LH Qu, JH Yang - Nucleic acids research, 2014 - academic.oup.com
Although microRNAs (miRNAs), other non-coding RNAs (ncRNAs)(eg lncRNAs,
pseudogenes and circRNAs) and competing endogenous RNAs (ceRNAs) have been …

Diurnal rhythms of wrist temperature are associated with future disease risk in the UK Biobank

TG Brooks, NF Lahens, GR Grant, YI Sheline… - Nature …, 2023 - nature.com
Many chronic disease symptomatologies involve desynchronized sleep-wake cycles,
indicative of disrupted biorhythms. This can be interrogated using body temperature …

Mistimed sleep disrupts circadian regulation of the human transcriptome

SN Archer, EE Laing, CS Möller-Levet… - Proceedings of the …, 2014 - National Acad Sciences
Circadian organization of the mammalian transcriptome is achieved by rhythmic recruitment
of key modifiers of chromatin structure and transcriptional and translational processes …

Cold-inducible proteins CIRP and RBM3, a unique couple with activities far beyond the cold

X Zhu, C Bührer, S Wellmann - Cellular and molecular life sciences, 2016 - Springer
Cold-inducible RNA-binding protein (CIRP) and RNA-binding motif protein 3 (RBM3) are
two evolutionarily conserved RNA-binding proteins that are transcriptionally upregulated in …

Cleavage and polyadenylation: Ending the message expands gene regulation

J Neve, R Patel, Z Wang, A Louey, AM Furger - RNA biology, 2017 - Taylor & Francis
Cleavage and polyadenylation (pA) is a fundamental step that is required for the maturation
of primary protein encoding transcripts into functional mRNAs that can be exported from the …

How sleep and wakefulness influence circadian rhythmicity: effects of insufficient and mistimed sleep on the animal and human transcriptome

SN Archer, H Oster - Journal of sleep research, 2015 - Wiley Online Library
The mammalian circadian system is a multi‐oscillator, hierarchically organised system
where a central pacemaker synchronises behavioural, physiological and gene expression …

A conserved kinase-based body-temperature sensor globally controls alternative splicing and gene expression

T Haltenhof, A Kotte, F De Bortoli, S Schiefer, S Meinke… - Molecular Cell, 2020 - cell.com
Homeothermic organisms maintain their core body temperature in a narrow, tightly
controlled range. Whether and how subtle circadian oscillations or disease-associated …

[HTML][HTML] Cellular stress alters 3′ UTR landscape through alternative polyadenylation and isoform-specific degradation

D Zheng, R Wang, Q Ding, T Wang, B Xie, L Wei… - Nature …, 2018 - nature.com
Most eukaryotic genes express alternative polyadenylation (APA) isoforms with different 3′
UTR lengths, production of which is influenced by cellular conditions. Here, we show that …