Extending machine learning beyond interatomic potentials for predicting molecular properties

N Fedik, R Zubatyuk, M Kulichenko, N Lubbers… - Nature Reviews …, 2022 - nature.com
Abstract Machine learning (ML) is becoming a method of choice for modelling complex
chemical processes and materials. ML provides a surrogate model trained on a reference …

Open-source machine learning in computational chemistry

A Hagg, KN Kirschner - Journal of Chemical Information and …, 2023 - ACS Publications
The field of computational chemistry has seen a significant increase in the integration of
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …

[HTML][HTML] Exploring the frontiers of condensed-phase chemistry with a general reactive machine learning potential

S Zhang, MZ Makoś, RB Jadrich, E Kraka, K Barros… - Nature Chemistry, 2024 - nature.com
Atomistic simulation has a broad range of applications from drug design to materials
discovery. Machine learning interatomic potentials (MLIPs) have become an efficient …

[HTML][HTML] Uncertainty-driven dynamics for active learning of interatomic potentials

M Kulichenko, K Barros, N Lubbers, YW Li… - Nature Computational …, 2023 - nature.com
Abstract Machine learning (ML) models, if trained to data sets of high-fidelity quantum
simulations, produce accurate and efficient interatomic potentials. Active learning (AL) is a …

[HTML][HTML] Single-model uncertainty quantification in neural network potentials does not consistently outperform model ensembles

AR Tan, S Urata, S Goldman, JCB Dietschreit… - npj Computational …, 2023 - nature.com
Neural networks (NNs) often assign high confidence to their predictions, even for points far
out of distribution, making uncertainty quantification (UQ) a challenge. When they are …

[HTML][HTML] A quantum chemical interaction energy dataset for accurately modeling protein-ligand interactions

SA Spronk, ZL Glick, DP Metcalf, CD Sherrill… - Scientific Data, 2023 - nature.com
Fast and accurate calculation of intermolecular interaction energies is desirable for
understanding many chemical and biological processes, including the binding of small …

Fluctuations at Metal Halide Perovskite Grain Boundaries Create Transient Trap States: Machine Learning Assisted Ab Initio Analysis

Y Wu, D Liu, W Chu, B Wang, AS Vasenko… - … Applied Materials & …, 2022 - ACS Publications
All-inorganic perovskites are promising candidates for solar energy and optoelectronic
applications, despite their polycrystalline nature with a large density of grain boundaries …

Extreme Ion‐Transport Inorganic 2D Membranes for Nanofluidic Applications

S Kim, H Choi, B Kim, G Lim, T Kim, M Lee… - Advanced …, 2023 - Wiley Online Library
Inorganic 2D materials offer a new approach to controlling mass diffusion at the nanoscale.
Controlling ion transport in nanofluidics is key to energy conversion, energy storage, water …

Machine learning assisted simulations of electrochemical interfaces: recent progress and challenges

Y Zhou, Y Ouyang, Y Zhang, Q Li… - The Journal of Physical …, 2023 - ACS Publications
The electrochemical interface, where the adsorption of reactants and electrocatalytic
reactions take place, has long been a focus of attention. Some of the important processes on …

Auto3d: Automatic generation of the low-energy 3d structures with ANI neural network potentials

Z Liu, T Zubatiuk, A Roitberg… - Journal of Chemical …, 2022 - ACS Publications
Computational programs accelerate the chemical discovery processes but often need
proper three-dimensional molecular information as part of the input. Getting optimal …