[HTML][HTML] Automated and semi-automated enhancement, segmentation and tracing of cytoskeletal networks in microscopic images: A review

B Özdemir, R Reski - Computational and structural biotechnology journal, 2021 - Elsevier
Cytoskeletal filaments are structures of utmost importance to biological cells and organisms
due to their versatility and the significant functions they perform. These biopolymers are most …

Snakes on a plane: A perfect snap for bioimage analysis

R Delgado-Gonzalo, V Uhlmann… - IEEE Signal …, 2014 - ieeexplore.ieee.org
In recent years, there has been an increasing interest in getting a proper quantitative
understanding of cellular and molecular processes [1],[2]. One of the major challenges of …

Quantitative mapping of keratin networks in 3D

R Windoffer, N Schwarz, S Yoon, T Piskova… - Elife, 2022 - elifesciences.org
Mechanobiology requires precise quantitative information on processes taking place in
specific 3D microenvironments. Connecting the abundance of microscopical, molecular …

3D actin network centerline extraction with multiple active contours

T Xu, D Vavylonis, X Huang - Medical image analysis, 2014 - Elsevier
Fluorescence microscopy is frequently used to study two and three dimensional network
structures formed by cytoskeletal polymer fibers such as actin filaments and actin cables …

Adaptive polar active contour for segmentation and tracking in ultrasound videos

E Karami, MS Shehata, A Smith - IEEE Transactions on Circuits …, 2018 - ieeexplore.ieee.org
Detection of relative changes in circulating blood volume is important to guide resuscitation
and manage a variety of medical conditions, including sepsis, trauma, dialysis, and …

[HTML][HTML] An integrated enhancement and reconstruction strategy for the quantitative extraction of actin stress fibers from fluorescence micrographs

Z Zhang, S Xia, P Kanchanawong - BMC bioinformatics, 2017 - Springer
Background The stress fibers are prominent organization of actin filaments that perform
important functions in cellular processes such as migration, polarization, and traction force …

[HTML][HTML] Combining image restoration and traction force microscopy to study extracellular matrix-dependent keratin filament network plasticity

S Yoon, R Windoffer, AN Kozyrina, T Piskova… - Frontiers in Cell and …, 2022 - frontiersin.org
Keratin intermediate filaments are dynamic cytoskeletal components that are responsible for
tuning the mechanical properties of epithelial tissues. Although it is known that keratin …

[HTML][HTML] Efficient multiple object tracking using mutually repulsive active membranes

Y Deng, P Coen, M Sun, JW Shaevitz - PloS one, 2013 - journals.plos.org
Studies of social and group behavior in interacting organisms require high-throughput
analysis of the motion of a large number of individual subjects. Computer vision techniques …

Extraction and analysis of actin networks based on open active contour models

T Xu, H Li, T Shen, N Ojkic… - … Imaging: From Nano …, 2011 - ieeexplore.ieee.org
Network structures formed by actin filaments are present in many kinds of fluorescence
microscopy images. In order to quantify the conformations and dynamics of such actin …

Use of artificial neural networks to identify and analyze polymerized actin‐based cytoskeletal structures in 3D confocal images

D Park - Quantitative Biology, 2023 - Wiley Online Library
We propose an artificial neural network (ANN) as a kernel function of the recognizer of
legitimate CABs from candidate CABs, that does not need human interventions. The …