Medicinal chemistry and bioinformatics-current trends in drugs discovery with networks topological indices

H Gonzalez-Diaz, S Vilar, L Santana… - Current topics in …, 2007 - ingentaconnect.com
The numerical encoding of chemical structure with Topological Indices (TIs) is currently
growing in importance in Medicinal Chemistry and Bioinformatics. This approach allows the …

Predicting antimicrobial drugs and targets with the MARCH-INSIDE approach

H González-Díaz, F Prado-Prado… - Current topics in …, 2008 - ingentaconnect.com
The method MARCH-INSIDE (MARkovian CHemicals IN SIlico DEsign) is a simple but
efficient computational approach to the study of Quantitative Structure-Activity Relationships …

Unified QSAR approach to antimicrobials. Part 3: first multi-tasking QSAR model for input-coded prediction, structural back-projection, and complex networks …

FJ Prado-Prado, H González-Díaz… - Bioorganic & medicinal …, 2008 - Elsevier
Several pathogen parasite species show different susceptibilities to different antiparasite
drugs. Unfortunately, almost all structure-based methods are one-task or one-target …

ProtDCal: A program to compute general-purpose-numerical descriptors for sequences and 3D-structures of proteins

YB Ruiz-Blanco, W Paz, J Green, Y Marrero-Ponce - BMC bioinformatics, 2015 - Springer
Background The exponential growth of protein structural and sequence databases is
enabling multifaceted approaches to understanding the long sought sequence-structure …

QuBiLS-MAS, open source multi-platform software for atom- and bond-based topological (2D) and chiral (2.5D) algebraic molecular descriptors computations

JR Valdés-Martiní, Y Marrero-Ponce… - Journal of …, 2017 - Springer
Abstract Background In previous reports, Marrero-Ponce et al. proposed algebraic
formalisms for characterizing topological (2D) and chiral (2.5 D) molecular features through …

QuBiLS‐MIDAS: A parallel free‐software for molecular descriptors computation based on multilinear algebraic maps

CR García‐Jacas, Y Marrero‐Ponce… - 2014 - Wiley Online Library
The present report introduces the QuBiLS‐MIDAS software belonging to the ToMoCoMD‐
CARDD suite for the calculation of three‐dimensional molecular descriptors (MDs) based on …

HP-Lattice QSAR for dynein proteins: experimental proteomics (2D-electrophoresis, mass spectrometry) and theoretic study of a Leishmania infantum sequence

MA Dea-Ayuela, Y Pérez-Castillo… - Bioorganic & medicinal …, 2008 - Elsevier
The toxicity and inefficacy of actual organic drugs against Leishmaniosis justify research
projects to find new molecular targets in Leishmania species including Leishmania infantum …

Simultaneous Virtual Prediction of Anti-Escherichia coli Activities and ADMET Profiles: A Chemoinformatic Complementary Approach for High-Throughput Screening

A Speck-Planche, M Cordeiro - ACS combinatorial science, 2014 - ACS Publications
Escherichia coli remains one of the principal pathogens that cause nosocomial infections,
medical conditions that are increasingly common in healthcare facilities. E. coli is …

Predicting antitrichomonal activity: a computational screening using atom-based bilinear indices and experimental proofs

Y Marrero-Ponce, A Meneses-Marcel… - Bioorganic & medicinal …, 2006 - Elsevier
Existing Trichomonas vaginalis therapies are out of reach for most trichomoniasis people in
developing countries and, where available, they are limited by their toxicity (mainly in …

Predicting drugs and proteins in parasite infections with topological indices of complex networks: theoretical backgrounds, applications and legal issues

H Gonzalez-Diaz, F Romaris… - Current …, 2010 - ingentaconnect.com
Quantitative Structure-Activity Relationship (QSAR) models have been used in
Pharmaceutical design and Medicinal Chemistry for the discovery of anti-parasite drugs …