Intrinsically disordered proteins play diverse roles in cell signaling

SE Bondos, AK Dunker, VN Uversky - Cell Communication and Signaling, 2022 - Springer
Signaling pathways allow cells to detect and respond to a wide variety of chemical (eg Ca2+
or chemokine proteins) and physical stimuli (eg, sheer stress, light). Together, these …

[HTML][HTML] Nuclear localization and actions of the insulin-like growth factor 1 (IGF-1) system components: Transcriptional regulation and DNA damage response

E Poreba, J Durzynska - Mutation Research/Reviews in Mutation Research, 2020 - Elsevier
Insulin-like growth factor (IGF) system stimulates growth, proliferation, and regulates
differentiation of cells in a tissue-specific manner. It is composed of two insulin-like growth …

Brain wave classification using long short-term memory network based OPTICAL predictor

S Kumar, A Sharma, T Tsunoda - Scientific reports, 2019 - nature.com
Brain-computer interface (BCI) systems having the ability to classify brain waves with greater
accuracy are highly desirable. To this end, a number of techniques have been proposed …

An improved discriminative filter bank selection approach for motor imagery EEG signal classification using mutual information

S Kumar, A Sharma, T Tsunoda - BMC bioinformatics, 2017 - Springer
Background Common spatial pattern (CSP) has been an effective technique for feature
extraction in electroencephalography (EEG) based brain computer interfaces (BCIs) …

[HTML][HTML] Computational prediction of MoRFs, short disorder-to-order transitioning protein binding regions

A Katuwawala, Z Peng, J Yang, L Kurgan - Computational and Structural …, 2019 - Elsevier
Molecular recognition features (MoRFs) are short protein-binding regions that undergo
disorder-to-order transitions (induced folding) upon binding protein partners. These regions …

Computational prediction of disordered binding regions

S Basu, D Kihara, L Kurgan - Computational and Structural Biotechnology …, 2023 - Elsevier
One of the key features of intrinsically disordered regions (IDRs) is their ability to interact
with a broad range of partner molecules. Multiple types of interacting IDRs were identified …

OPAL: prediction of MoRF regions in intrinsically disordered protein sequences

R Sharma, G Raicar, T Tsunoda, A Patil… - …, 2018 - academic.oup.com
Motivation Intrinsically disordered proteins lack stable 3-dimensional structure and play a
crucial role in performing various biological functions. Key to their biological function are the …

Protein function analysis through machine learning

C Avery, J Patterson, T Grear, T Frater, DJ Jacobs - Biomolecules, 2022 - mdpi.com
Machine learning (ML) has been an important arsenal in computational biology used to
elucidate protein function for decades. With the recent burgeoning of novel ML methods and …

Protein secondary structure prediction: a review of progress and directions

T Smolarczyk, I Roterman-Konieczna… - Current …, 2020 - ingentaconnect.com
Background: Over the last few decades, a search for the theory of protein folding has grown
into a full-fledged research field at the intersection of biology, chemistry and informatics …

APOD: accurate sequence-based predictor of disordered flexible linkers

Z Peng, Q Xing, L Kurgan - Bioinformatics, 2020 - academic.oup.com
Abstract Motivation Disordered flexible linkers (DFLs) are abundant and functionally
important intrinsically disordered regions that connect protein domains and structural …