[HTML][HTML] Membrane proteins structures: A review on computational modeling tools
Abstract Background Membrane proteins (MPs) play diverse and important functions in
living organisms. They constitute 20% to 30% of the known bacterial, archaean and …
living organisms. They constitute 20% to 30% of the known bacterial, archaean and …
Membrane protein structural bioinformatics
Despite the increasing number of recently solved membrane protein structures, coverage of
membrane protein fold space remains relatively sparse. This necessitates the use of …
membrane protein fold space remains relatively sparse. This necessitates the use of …
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins
Abstract Motivation The PRED-TMBB method is based on Hidden Markov Models and is
capable of predicting the topology of beta-barrel outer membrane proteins and discriminate …
capable of predicting the topology of beta-barrel outer membrane proteins and discriminate …
Identifying the molecular functions of electron transport proteins using radial basis function networks and biochemical properties
YY Ou - Journal of Molecular Graphics and Modelling, 2017 - Elsevier
The electron transport proteins have an important role in storing and transferring electrons in
cellular respiration, which is the most proficient process through which cells gather energy …
cellular respiration, which is the most proficient process through which cells gather energy …
BOCTOPUS: improved topology prediction of transmembrane β barrel proteins
S Hayat, A Elofsson - Bioinformatics, 2012 - academic.oup.com
Motivation: Transmembrane β barrel proteins (TMBs) are found in the outer membrane of
Gram-negative bacteria, chloroplast and mitochondria. They play a major role in the …
Gram-negative bacteria, chloroplast and mitochondria. They play a major role in the …
OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria
KD Tsirigos, PG Bagos… - Nucleic acids research, 2010 - academic.oup.com
We describe here OMPdb, which is currently the most complete and comprehensive
collection of integral β-barrel outer membrane proteins from Gram-negative bacteria. The …
collection of integral β-barrel outer membrane proteins from Gram-negative bacteria. The …
[HTML][HTML] Integrative approach for detecting membrane proteins
Background Membrane proteins are key gates that control various vital cellular functions.
Membrane proteins are often detected using transmembrane topology prediction tools …
Membrane proteins are often detected using transmembrane topology prediction tools …
Recent advances in features generation for membrane protein sequences: From multiple sequence alignment to pre‐trained language models
Membrane proteins play a crucial role in various cellular processes and are essential
components of cell membranes. Computational methods have emerged as a powerful tool …
components of cell membranes. Computational methods have emerged as a powerful tool …
High-resolution structure prediction of β-barrel membrane proteins
β-Barrel membrane proteins (β MPs) play important roles, but knowledge of their structures
is limited. We have developed a method to predict their 3D structures. We predict strand …
is limited. We have developed a method to predict their 3D structures. We predict strand …
Current advances in the identification and characterization of putative drug and vaccine targets in the bacterial genomes
The development in sequencing technologies over the past few decades have increased the
pace of decoding genetic and functional information present in the genomes of pathogenic …
pace of decoding genetic and functional information present in the genomes of pathogenic …