Transcriptional regulation via the NF-κB signaling module

A Hoffmann, G Natoli, G Ghosh - Oncogene, 2006 - nature.com
Stimulus-induced nuclear factor-κB (NF-κB) activity, the central mediator of inflammatory
responses and immune function, comprises a family of dimeric transcription factors that …

Cancer systems biology: a network modeling perspective

PK Kreeger, DA Lauffenburger - Carcinogenesis, 2010 - academic.oup.com
Cancer is now appreciated as not only a highly heterogenous pathology with respect to cell
type and tissue origin but also as a disease involving dysregulation of multiple pathways …

[HTML][HTML] Sequential application of anticancer drugs enhances cell death by rewiring apoptotic signaling networks

MJ Lee, SY Albert, AK Gardino, AM Heijink, PK Sorger… - Cell, 2012 - cell.com
Crosstalk and complexity within signaling pathways and their perturbation by oncogenes
limit component-by-component approaches to understanding human disease. Network …

An analysis of critical factors for quantitative immunoblotting

KA Janes - Science signaling, 2015 - science.org
Immunoblotting (also known as Western blotting) combined with digital image analysis can
be a reliable method for analyzing the abundance of proteins and protein modifications, but …

Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction

J Saez‐Rodriguez, LG Alexopoulos… - Molecular systems …, 2009 - embopress.org
Large‐scale protein signalling networks are useful for exploring complex biochemical
pathways but do not reveal how pathways respond to specific stimuli. Such specificity is …

A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis

KA Janes, JG Albeck, S Gaudet, PK Sorger… - Science, 2005 - science.org
Signal transduction pathways control cellular responses to stimuli, but it is unclear how
molecular information is processed as a network. We constructed a systems model of 7980 …

Data-driven modelling of signal-transduction networks

KA Janes, MB Yaffe - Nature reviews Molecular cell biology, 2006 - nature.com
New technologies are permitting large-scale quantitative studies of signal-transduction
networks. Such data are hard to understand completely by inspection and intuition.'Data …

Modeling a snap-action, variable-delay switch controlling extrinsic cell death

JG Albeck, JM Burke, SL Spencer… - PLoS …, 2008 - journals.plos.org
When exposed to tumor necrosis factor (TNF) or TNF-related apoptosis-inducing ligand
(TRAIL), a closely related death ligand and investigational therapeutic, cells enter a …

Tethered epidermal growth factor provides a survival advantage to mesenchymal stem cells

VH Fan, A Au, K Tamama, R Littrell, LB Richardson… - Stem …, 2007 - academic.oup.com
MSC can act as a pluripotent source of reparative cells during injury and therefore have
great potential in regenerative medicine and tissue engineering. However, the response of …

Effects of HER2 overexpression on cell signaling networks governing proliferation and migration

A Wolf‐Yadlin, N Kumar, Y Zhang… - Molecular systems …, 2006 - embopress.org
Although human epidermal growth factor receptor 2 (HER2) overexpression is implicated in
tumor progression for a variety of cancer types, how it dysregulates signaling networks …