Interpretable discovery of patterns in tabular data via spatially semantic topographic maps

R Yan, MT Islam, L Xing - Nature Biomedical Engineering, 2024 - nature.com
Tabular data—rows of samples and columns of sample features—are ubiquitously used
across disciplines. Yet the tabular representation makes it difficult to discover underlying …

The role of CD4+ T cells in visceral leishmaniasis; new and emerging roles for NKG7 and TGFβ

J Na, C Engwerda - Frontiers in Cellular and Infection Microbiology, 2024 - frontiersin.org
Visceral leishmaniasis is a potentially devastating neglected tropical disease caused by the
protozoan parasites Leishmania donovani and L. infantum (chagasi). These parasites reside …

Transcriptomic profiling of peripheral blood cells in HPV‐associated carcinoma patients receiving combined valproic acid and avelumab

N Bozorgmehr, H Syed, S Mashhouri… - Molecular …, 2024 - Wiley Online Library
Human papillomavirus (HPV)‐associated cancer continues to evade the immune system by
promoting a suppressive tumor microenvironment. Therefore, immunotherapy appears to be …

Spatially restricted tumour-associated and host-associated immune drivers correlate with the recurrence sites of pancreatic cancer

E Karamitopoulou, AS Wenning, A Acharjee, I Zlobec… - Gut, 2023 - gut.bmj.com
Objective Most patients with pancreatic ductal adenocarcinoma (PDAC) will experience
recurrence after resection. Here, we investigate spatially organised immune determinants of …

Single-cell RNA sequencing reveals Immune Education promotes T cell survival in mice subjected to the cecal ligation and puncture sepsis model

SD Ham, MN Abraham, CS Deutschman… - Frontiers in …, 2024 - frontiersin.org
Background Individual T cell responses vary significantly based on the microenvironment
present at the time of immune response and on prior induced T cell memory. While the cecal …

Shared biomarkers and immune cell infiltration signatures in ulcerative colitis and nonalcoholic steatohepatitis

W Wang, X Gao, N Kang, C Wang, C Li, H Yu… - Scientific Reports, 2023 - nature.com
The coexistence of ulcerative colitis (UC) and nonalcoholic steatohepatitis (NASH) involves
a intricate interplay, though the precise pathophysiological mechanisms remain elusive. To …

Transcriptomics analysis of differential gene expression and immune and inflammatory response mechanisms in patients with typical and non-criteria obstetric …

X Qi, P Liu, Y Zhou, L Lei, G Xue, R Wang… - Journal of Reproductive …, 2024 - Elsevier
In this study, we investigated the molecular differences between patients with typical
obstetric antiphospholipid syndrome (OAPS) and patients with non-criteria obstetric …

Identification of key immune-related genes and potential therapeutic targets in immune checkpoint inhibitor–associated myocarditis

S Qu, J Zhang, K Wang, Y Zhou - Postgraduate Medical Journal, 2024 - academic.oup.com
Abstract Background Immune checkpoint inhibitors (ICIs) are widely used in cancer
treatment; however, the emergence of ICI-associated myocarditis (ICI-MC) presents a severe …

SUPPLEMENTARY MATERIALS AND METHODS

E Karamitopoulou, AS Wenning, A Acharjee, I Zlobec… - Gut, 2023 - gut.bmj.com
An external validation cohort of 109 PDACs was examined in parallel. These included 33
PDACs with liver recurrences (30.3%; liver and any other sites), 20 cases with lung …

Prognostic immune biomarkers in metastatic castration resistant prostate cancer

FML Olmedo, M de los Dolores - repositorioinstitucional.ceu.es
Metastatic castration-resistant prostate cancer (mCRPC) is a heterogeneous disease
characterised by the lack of durable responses to standard therapies currently approved for …