Chemoinformatics as a theoretical chemistry discipline

A Varnek, II Baskin - Molecular Informatics, 2011 - Wiley Online Library
Here, chemoinformatics is considered as a theoretical chemistry discipline complementary
to quantum chemistry and force‐field molecular modeling. These three fields are compared …

In silico tools to aid risk assessment of endocrine disrupting chemicals

MN Jacobs - Toxicology, 2004 - Elsevier
In silico or computational tools could be used more effectively in endocrine disruptor risk
assessment for prescreening potential endocrine disruptors, improving experimental in vitro …

QSAR study and molecular docking on indirubin inhibitors of Glycogen Synthase Kinase-3

L Crisan, L Pacureanu, A Bora, S Avram… - … European Journal of …, 2013 - Springer
The current study describes the development of in silico models based on a novel
alternative of the MTD-PLS methodology (Partial-Least-Squares variant of Minimal …

MTD− PLS: A PLS Variant of the Minimal Topologic Difference Method. III. Mapping Interactions between Estradiol Derivatives and the Alpha Estrogenic Receptor

L Kurunczi, E Seclaman, TI Oprea… - Journal of chemical …, 2005 - ACS Publications
A homogeneous collection of 45 estrogen agonist derivatives with relative binding affinities
measured to the estrogen receptor from Ratus norvegicus was used. The quantitative …

Comparative molecular active site analysis (CoMASA). 1. An approach to rapid evaluation of 3D QSAR

T Kotani, K Higashiura - Journal of medicinal chemistry, 2004 - ACS Publications
We have developed a rapid evaluation method, comparative molecular active site analysis
(CoMASA), for obtaining 3D QSAR. CoMASA has three major advantages:(1) the CoMASA …

Probing the acyl-binding pocket of aminoacylase-1

HA Lindner, A Alary, M Wilke, T Sulea - Biochemistry, 2008 - ACS Publications
The aminoacylase-1/metallopeptidase 20 (Acy1/M20) family features several l-
aminoacylases useful in biocatalysis. Mammalian Acy1, in particular, has been applied in …

Локальные молекулярные характеристики в анализе количественной связи" структура-активность"

ЕВ Радченко, ВА Палюлин… - Российский химический …, 2006 - cyberleninka.ru
Введение Среди видов активности, рассматриваемых при поиске эффективных
лекарств и других биологически активных соединений, особый интерес представляет …

Application of the MTD‐PLS method to heterocyclic dye–cellulose interactions

L Kurunczi, S Funar‐Timofei, A Bora… - … Journal of Quantum …, 2007 - Wiley Online Library
The minimal topologic difference method in a projection in latent structures variant
procedure was applied to a series of heterocyclic monoazo dyes of the type: R C6H4 N …

Representing two-dimensional (2D) chemical structures with molecular graphs

O Ivanciuc - Handbook of chemoinformatics algorithms, 2010 - taylorfrancis.com
Graphs are used as an efficient abstraction and approximation for diverse chemical systems,
such as chemical compounds, ensembles ofmolecules, molecular fragments, polymers …

A preliminary MTD‐PLS study for androgen receptor binding of steroid compounds

A Bora, E Seclaman, L Kurunczi… - … Journal of Quantum …, 2007 - Wiley Online Library
The relative binding affinities (RBA) of a series of 30 steroids for Human Androgen Receptor
(AR) were used to initiate a MTD-PLS study. The 3D structures of all the compounds were …