Information transmission from NFkB signaling dynamics to gene expression

A Maity, R Wollman - PLoS computational biology, 2020 - journals.plos.org
The dynamic signal encoding paradigm suggests that information flows from the
extracellular environment into specific signaling patterns (encoding) that are then read by …

Rate-oriented trans-omics: integration of multiple omic data on the basis of reaction kinetics

K Yugi, S Ohno, JR Krycer, DE James… - Current Opinion in …, 2019 - Elsevier
We have presented 'trans-omics', a discipline that mechanistically connects multiple omic
layers. The relationships between molecules of distinct omic layers are governed by reaction …

[PDF][PDF] Iterative integrated imputation for missing data and pathway models with applications to breast cancer subtypes

H Linder, Y Zhang - Communications for Statistical Applications …, 2019 - koreascience.kr
Tumor development is driven by complex combinations of biological elements. Recent
advances suggest that molecularly distinct subtypes of breast cancers may respond …

[HTML][HTML] Current Application of Modeling and Cell-Free System for Synthetic Gene Circuit Design

TR Spartalis, A Lizano, CE Copeland… - Synthetic Biology and …, 2024 - sciepublish.com
The desire to harness nature's capability of precise gene expression regulation has
motivated the pursuit of synthetic gene circuits. However, designing and building novel …

Inferring the transcriptional regulatory mechanism of signal‐dependent gene expression via an integrative computational approach

S Chiang, H Shinohara, JH Huang, HK Tsai… - FEBS …, 2020 - Wiley Online Library
Eukaryotic transcription factors (TF s) coordinate different upstream signals to regulate the
expression of their target genes. To unveil this regulatory network in B‐cell receptor …

Development of a microfluidic cell culture and monitoring system for intracellular signaling studies

T Ohkubo, H Kinoshita, T Maekawa, K Kunida… - bioRxiv, 2018 - biorxiv.org
We describe a microfluidic cell culture and monitoring system that temporally controls
molecule concentrations around cells cultured in a small space. The simple system consists …

[PDF][PDF] EFFECTIVE DATA PARALLEL OPTIMIZATION FOR QUANTIFYING THE MATHEMATICAL MODEL OF SUBSYSTEMS IN MULTIVARIABLE SYSTEMS.

SA Omar, RN Othman, NF Ahmed… - Advanced …, 2021 - jomardpublishing.com
Aiming at the problem that intelligent algorithm can not accurately quantify the mathematical
model of each subsystem in the process of multi-variable system identification combined …

[图书][B] Linear Methods for Joint Analysis of Multivariate Genomics Data

MH Linder - 2019 - search.proquest.com
Abstract The rise of Big Data has enabled sophisticated analysis of the human genome in
unprecedented detail. Large datasets are now collected as a matter of routine, and their …