Museum specimens: An overlooked and valuable material for conservation genetics

N Nakahama - Ecological Research, 2021 - Wiley Online Library
Museum specimens include genetic information from when they were collected. This
historical information, which is very difficult to ascertain from samples collected currently …

European minnows through time: museum collections aid genetic assessment of species introductions in freshwater fishes (Cyprinidae: Phoxinus species complex)

A Palandačić, L Kruckenhauser, H Ahnelt, E Mikschi - Heredity, 2020 - nature.com
Massive fish introductions have taken place throughout much of the world, mostly over the
last 70 years, and present a major threat to the genetic diversity of native fishes …

Off-target capture data, endosymbiont genes and morphology reveal a relict lineage that is sister to all other singing cicadas

C Simon, ERL Gordon, MS Moulds… - Biological Journal of …, 2019 - academic.oup.com
Phylogenetic asymmetry is common throughout the tree of life and results from contrasting
patterns of speciation and extinction in the paired descendant lineages of ancestral nodes …

Chromosome-aware phylogenomics of Assassin Bugs (Hemiptera: Reduvioidea) elucidates ancient gene conflict

A Knyshov, ERL Gordon, PK Masonick… - Molecular Biology …, 2023 - academic.oup.com
Though the phylogenetic signal of loci on sex chromosomes can differ from those on
autosomes, chromosomal-level genome assemblies for nonvertebrates are still relatively …

HyRAD-X exome capture museomics unravels giant ground beetle evolution

EFA Toussaint, J Gauthier, J Bilat… - Genome biology and …, 2021 - academic.oup.com
Advances in phylogenomics contribute toward resolving long-standing evolutionary
questions. Notwithstanding, genetic diversity contained within more than a billion biological …

Evolution of stridulatory mechanisms: vibroacoustic communication may be common in leaf-footed bugs and allies (Heteroptera: Coreoidea)

M Forthman, C Downie, CW Miller… - Royal Society Open …, 2023 - royalsocietypublishing.org
Intra-and interspecific communication is crucial to fitness via its role in facilitating mating,
territoriality and defence. Yet, the evolution of animal communication systems is puzzling …

Predictors of sequence capture in a large-scale anchored phylogenomics project

R Nunes, C Storer, T Doleck, AY Kawahara… - Frontiers in Ecology …, 2022 - frontiersin.org
Next-generation sequencing (NGS) technologies have revolutionized phylogenomics by
decreasing the cost and time required to generate sequence data from multiple markers or …

UPrimer: A Clade-Specific Primer Design Program Based on Nested-PCR Strategy and Its Applications in Amplicon Capture Phylogenomics

JX Li, GC Han, X Tian, D Liang… - Molecular Biology and …, 2023 - academic.oup.com
Amplicon capture is a promising target sequence capture approach for phylogenomic
analyses, and the design of clade-specific nuclear protein-coding locus (NPCL) …

Phylogenomics of the leaf-footed bug subfamily Coreinae (Hemiptera: Coreidae)

M Forthman, CW Miller… - Insect Systematics and …, 2020 - academic.oup.com
Baits targeting invertebrate ultraconserved elements (UCEs) are becoming more common
for phylogenetic studies. Recent studies have shown that invertebrate UCEs typically …

New alignment-based sequence extraction software (ALiBaSeq) and its utility for deep level phylogenetics

A Knyshov, ERL Gordon, C Weirauch - PeerJ, 2021 - peerj.com
Despite many bioinformatic solutions for analyzing sequencing data, few options exist for
targeted sequence retrieval from whole genomic sequencing (WGS) data with the ultimate …