Stochastic switching in biology: from genotype to phenotype

PC Bressloff - Journal of Physics A: Mathematical and …, 2017 - iopscience.iop.org
There has been a resurgence of interest in non-equilibrium stochastic processes in recent
years, driven in part by the observation that the number of molecules (genes, mRNA …

Foundations of chemical reaction network theory

M Feinberg - 2019 - Springer
When I am called upon to teach fluid mechanics, I always show students a copy of Newton's
Principia. I do this for a number of reasons, not least of which is the connection I hope they …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Product-form stationary distributions for deficiency zero chemical reaction networks

DF Anderson, G Craciun, TG Kurtz - Bulletin of mathematical biology, 2010 - Springer
We consider stochastically modeled chemical reaction systems with mass-action kinetics
and prove that a product-form stationary distribution exists for each closed, irreducible …

A proof of the global attractor conjecture in the single linkage class case

DF Anderson - SIAM Journal on Applied Mathematics, 2011 - SIAM
This paper is concerned with the dynamical properties of deterministically modeled chemical
reaction systems. Specifically, this paper provides a proof of the Global Attractor Conjecture …

Persistence and permanence of mass-action and power-law dynamical systems

G Craciun, F Nazarov, C Pantea - SIAM Journal on Applied Mathematics, 2013 - SIAM
Persistence and permanence are properties of dynamical systems that describe the long-
term behavior of the solutions and in particular specify whether positive solutions approach …

Toric differential inclusions and a proof of the global attractor conjecture

G Craciun - arXiv preprint arXiv:1501.02860, 2015 - arxiv.org
The global attractor conjecture says that toric dynamical systems (ie, a class of polynomial
dynamical systems on the positive orthant) have a globally attracting point within each …

A geometric approach to the global attractor conjecture

M Gopalkrishnan, E Miller, A Shiu - SIAM Journal on Applied Dynamical …, 2014 - SIAM
This paper introduces the class of strongly endotactic networks, a subclass of the endotactic
networks introduced by Craciun, Nazarov, and Pantea. The main result states that the global …

Modeling and designing self-organized aggregation in a swarm of miniature robots

N Correll, A Martinoli - The International Journal of Robotics …, 2011 - journals.sagepub.com
We model the dynamics of self-organized robot aggregation inspired by a study on the
aggregation of gregarious arthropods. In swarms of German cockroaches, aggregation into …

On the persistence and global stability of mass-action systems

C Pantea - SIAM Journal on Mathematical Analysis, 2012 - SIAM
This paper concerns the long-term behavior of population systems, and in particular of
chemical reaction systems, modeled by deterministic mass-action kinetics. We approach two …