Methods to improve the accuracy of next-generation sequencing

C Cheng, Z Fei, P Xiao - Frontiers in bioengineering and …, 2023 - frontiersin.org
Next-generation sequencing (NGS) is present in all fields of life science, which has greatly
promoted the development of basic research while being gradually applied in clinical …

From molecules to populations: appreciating and estimating recombination rate variation

JV Peñalba, JBW Wolf - Nature Reviews Genetics, 2020 - nature.com
Recombination is a central biological process with implications for many areas in the life
sciences. Yet we are only beginning to appreciate variation in the recombination rate along …

Interactive analysis and assessment of single-cell copy-number variations

T Garvin, R Aboukhalil, J Kendall, T Baslan, GS Atwal… - Nature …, 2015 - nature.com
Abstract We present Ginkgo (http://qb. cshl. edu/ginkgo), a user-friendly, open-source web
platform for the analysis of single-cell copy-number variations (CNVs). Ginkgo automatically …

Next-generation sequencing (NGS) in the microbiological world: How to make the most of your money

AT Vincent, N Derome, B Boyle, AI Culley… - Journal of …, 2017 - Elsevier
The Sanger sequencing method produces relatively long DNA sequences of unmatched
quality and has been considered for long time as the gold standard for sequencing DNA …

The trajectory of microbial single-cell sequencing

T Woyke, DFR Doud, F Schulz - Nature Methods, 2017 - nature.com
Over the past decade, it has become nearly routine to sequence genomes of individual
microbial cells directly isolated from environmental samples ranging from deep-sea …

Diverse modes of clonal evolution in HBV-related hepatocellular carcinoma revealed by single-cell genome sequencing

M Duan, J Hao, S Cui, DL Worthley, S Zhang, Z Wang… - Cell research, 2018 - nature.com
Hepatocellular carcinoma (HCC) is a cancer of substantial morphologic, genetic and
phenotypic diversity. Yet we do not understand the relationship between intratumor …

Challenges of studying the human virome–relevant emerging technologies

MK Mirzaei, J Xue, R Costa, J Ru, S Schulz… - Trends in …, 2021 - cell.com
In this review we provide an overview of current challenges and advances in bacteriophage
research within the growing field of viromics. In particular, we discuss, from a human virome …

Single-cell RNA sequencing: technological progress and biomedical application in cancer research

X Chang, Y Zheng, K Xu - Molecular Biotechnology, 2024 - Springer
Single-cell RNA-seq (scRNA-seq) is a revolutionary technology that allows for the genomic
investigation of individual cells in a population, allowing for the discovery of unusual cells …

Chromosomal analysis in IVF: just how useful is it?

DK Griffin, C Ogur - Reproduction, 2018 - rep.bioscientifica.com
Designed to minimize chances of transferring genetically abnormal embryos,
preimplantation genetic diagnosis (PGD) involves in vitro fertilization (IVF), embryo biopsy …

Single-cell metagenomics: challenges and applications

Y Xu, F Zhao - Protein & cell, 2018 - academic.oup.com
With the development of high throughput sequencing and single-cell genomics
technologies, many uncultured bacterial communities have been dissected by combining …