Applications of graph theory in studying protein structure, dynamics, and interactions

Z Zhou, G Hu - Journal of Mathematical Chemistry, 2023 - Springer
Being a core tool, graph theory, as a mathematical formalism in mathematical chemistry, has
become an essential approach for studying the complex behavior and interactions in protein …

Disease Network-Based Approaches to Study Comorbidity in Heart Failure: Current State and Future Perspectives

SA Gomez-Ochoa, JD Lanzer, RT Levinson - Current Heart Failure …, 2025 - Springer
Network approaches hold promise for unraveling the impact of comorbidities in the complex
presentation and genetics of HF. Methods that consider comorbidity presence and timing …

Integrated analysis of single-cell and bulk RNA sequencing data identifies the characteristics of ferroptosis in lumbar disc herniation

Z Lu, Z Zheng - Functional & Integrative Genomics, 2023 - Springer
Lumbar disc herniation (LDH) is the most common condition associated with low back pain,
and it adversely impacts individuals' health. Ferroptosis has recently emerged as a novel …

Architecture and topologies of gene regulatory networks associated with breast cancer, adjacent normal, and normal tissues

S Kumar, V Vindal - Functional & Integrative Genomics, 2023 - Springer
Most cancer studies employ adjacent normal tissues to tumors (ANTs) as controls, which are
not completely normal and represent a pre-cancerous state. However, the regulatory …

Reverse Game: From Nash equilibrium to network structure, number, and probability of occurrence

A Ebrahimi, M Sadeghi - 2023 - researchsquare.com
In this paper, we propose a reverse game approach to network-modeled games in order to
determine the network structure between players that can achieve a desired Nash …