Run-to-Tumble Variability Controls the Surface Residence Times of E. coli Bacteria

G Junot, T Darnige, A Lindner, VA Martinez, J Arlt… - Physical Review Letters, 2022 - APS
Motile bacteria are known to accumulate at surfaces, eventually leading to changes in
bacterial motility and biofilm formation. We use a novel two-color, three-dimensional …

A-to-I RNA editing in bacteria increases pathogenicity and tolerance to oxidative stress

W Nie, S Wang, R He, Q Xu, P Wang, Y Wu… - PLoS …, 2020 - journals.plos.org
Adenosine-to-inosine (A-to-I) RNA editing is an important posttranscriptional event in
eukaryotes; however, many features remain largely unexplored in prokaryotes. This study …

Optimal sensing and control of run-and-tumble chemotaxis

K Nakamura, TJ Kobayashi - Physical Review Research, 2022 - APS
Run-and-tumble chemotaxis is a representative search strategy for odor sources by sensing
its spatial gradients. The optimal ways of sensing and control in run-and-tumble chemotaxis …

Run-and-tumble particle with saturating rates

K Jain, S Chatterjee - Physical Review E, 2024 - APS
We consider a run-and-tumble particle whose speed and tumbling rate are space
dependent on an infinite line. Unlike most of the previous work on such models, here we …

Run-and-tumble chemotaxis using reinforcement learning

R Pramanik, S Mishra, S Chatterjee - arXiv preprint arXiv:2501.03687, 2025 - arxiv.org
Bacterial cells use run-and-tumble motion to climb up attractant concentration gradient in
their environment. By extending the uphill runs and shortening the downhill runs the cells …

Effect of switching time scale of receptor activity on chemotactic performance of Escherichia coli

SD Mandal, S Chatterjee - Indian Journal of Physics, 2022 - Springer
In the chemotactic motion of Escherichia coli, the switching of transmembrane
chemoreceptors between active and inactive states is one of the most important steps of the …

Effect of receptor clustering on chemotactic performance of E. coli: Sensing versus adaptation

SD Mandal, S Chatterjee - Physical Review E, 2021 - APS
We show how the competition between sensing and adaptation can result in a performance
peak in Escherichia coli chemotaxis using extensive numerical simulations in a detailed …

Effect of receptor cooperativity on methylation dynamics in bacterial chemotaxis with weak and strong gradient

SD Mandal, S Chatterjee - Physical Review E, 2022 - APS
We study methylation dynamics of the chemoreceptors as an Escherichia coli cell moves
around in a spatially varying chemoattractant environment. We consider attractant …

Run-and-tumble motion with steplike responses to a stochastic input

S Dev, S Chatterjee - Physical Review E, 2019 - APS
We study a simple run-and-tumble random walk whose switching frequencies between run
mode and tumble mode depend on a stochastic signal. We consider a particularly sharp …

Short time extremal response to step stimulus for a single cell E. coli

S Chatterjee - Journal of Statistical Mechanics: Theory and …, 2022 - iopscience.iop.org
After application of a step stimulus, in the form of a sudden change in attractant environment,
the receptor activity and tumbling bias of an E. coli cell change sharply to reach their …