Drought stress and root-associated bacterial communities

D Naylor, D Coleman-Derr - Frontiers in plant science, 2018 - frontiersin.org
Root-associated bacterial communities play a vital role in maintaining health of the plant
host. These communities exist in complex relationships, where composition and abundance …

Trends in microbial community composition and function by soil depth

D Naylor, R McClure, J Jansson - Microorganisms, 2022 - mdpi.com
Microbial communities play important roles in soil health, contributing to processes such as
the turnover of organic matter and nutrient cycling. As soil edaphic properties such as …

Deciphering factors driving soil microbial life‐history strategies in restored grasslands

Y Yang, Y Dou, B Wang, Z Xue, Y Wang, S An… - Imeta, 2023 - Wiley Online Library
In macroecology, the concept of r‐and K‐strategy has been widely applied, yet, there have
been limited studies on microbial life‐history strategies in temperate grasslands using …

[HTML][HTML] Anvi'o: an advanced analysis and visualization platform for 'omics data

AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison… - PeerJ, 2015 - peerj.com
Advances in high-throughput sequencing and 'omics technologies are revolutionizing
studies of naturally occurring microbial communities. Comprehensive investigations of …

Bacterial phylogeny structures soil resistomes across habitats

KJ Forsberg, S Patel, MK Gibson, CL Lauber, R Knight… - Nature, 2014 - nature.com
Ancient and diverse antibiotic resistance genes (ARGs) have previously been identified from
soil,,, including genes identical to those in human pathogens. Despite the apparent overlap …

Soil pH determines microbial diversity and composition in the park grass experiment

K Zhalnina, R Dias, PD de Quadros… - Microbial ecology, 2015 - Springer
Abstract The Park Grass experiment (PGE) in the UK has been ongoing since 1856. Its
purpose is to study the response of biological communities to the long-term treatments and …

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

N Fierer, JW Leff, BJ Adams… - Proceedings of the …, 2012 - National Acad Sciences
For centuries ecologists have studied how the diversity and functional traits of plant and
animal communities vary across biomes. In contrast, we have only just begun exploring …

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

P Trivedi, IC Anderson, BK Singh - Trends in microbiology, 2013 - cell.com
Soil organic carbon performs a number of functions in ecosystems and it is clear that
microbial communities play important roles in land–atmosphere carbon (C) exchange and …

Micro-scale determinants of bacterial diversity in soil

M Vos, AB Wolf, SJ Jennings… - FEMS microbiology …, 2013 - academic.oup.com
Soil habitats contain vast numbers of microorganisms and harbor a large portion of the
planet's biological diversity. Although high-throughput sequencing technologies continue to …

Comparing and evaluating metagenome assembly tools from a microbiologist's perspective-not only size matters!

J Vollmers, S Wiegand, AK Kaster - PloS one, 2017 - journals.plos.org
With the constant improvement in cost-efficiency and quality of Next Generation Sequencing
technologies, shotgun-sequencing approaches-such as metagenomics-have nowadays …