Whole-genome duplication and plant macroevolution

JW Clark, PCJ Donoghue - Trends in plant science, 2018 - cell.com
Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of
land plants. Unfortunately, the timings of WGD events are loosely constrained and …

The nearly complete genome of Ginkgo biloba illuminates gymnosperm evolution

H Liu, X Wang, G Wang, P Cui, S Wu, C Ai, N Hu, A Li… - Nature Plants, 2021 - nature.com
Gymnosperms are a unique lineage of plants that currently lack a high-quality reference
genome due to their large genome size and high repetitive sequence content. Here, we …

Evolution of complex genome architecture in gymnosperms

T Wan, Y Gong, Z Liu, YD Zhou, C Dai, Q Wang - GigaScience, 2022 - academic.oup.com
Gymnosperms represent an ancient lineage that diverged from early spermatophytes during
the Devonian. The long fossil records and low diversity in living species prove their complex …

Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms

GW Stull, XJ Qu, C Parins-Fukuchi, YY Yang, JB Yang… - Nature Plants, 2021 - nature.com
Inferring the intrinsic and extrinsic drivers of species diversification and phenotypic disparity
across the tree of life is a major challenge in evolutionary biology. In green plants, polyploidy …

A genome for gnetophytes and early evolution of seed plants

T Wan, ZM Liu, LF Li, AR Leitch, IJ Leitch, R Lohaus… - Nature Plants, 2018 - nature.com
Gnetophytes are an enigmatic gymnosperm lineage comprising three genera, Gnetum,
Welwitschia and Ephedra, which are morphologically distinct from all other seed plants …

The Cycas genome and the early evolution of seed plants

Y Liu, S Wang, L Li, T Yang, S Dong, T Wei, S Wu… - Nature Plants, 2022 - nature.com
Cycads represent one of the most ancient lineages of living seed plants. Identifying genomic
features uniquely shared by cycads and other extant seed plants, but not non-seed …

Oxygen-dependent proteolysis regulates the stability of angiosperm polycomb repressive complex 2 subunit VERNALIZATION 2

DJ Gibbs, HM Tedds, AM Labandera, M Bailey… - Nature …, 2018 - nature.com
The polycomb repressive complex 2 (PRC2) regulates epigenetic gene repression in
eukaryotes. Mechanisms controlling its developmental specificity and signal-responsiveness …

A target capture-based method to estimate ploidy from herbarium specimens

J Viruel, M Conejero, O Hidalgo, L Pokorny… - Frontiers in Plant …, 2019 - frontiersin.org
Whole genome duplication (WGD) events are common in many plant lineages, but the
ploidy status and possible occurrence of intraspecific ploidy variation are unknown for most …

Inference of ancient whole-genome duplications and the evolution of gene duplication and loss rates

A Zwaenepoel, Y Van de Peer - Molecular biology and evolution, 2019 - academic.oup.com
Gene tree–species tree reconciliation methods have been employed for studying ancient
whole-genome duplication (WGD) events across the eukaryotic tree of life. Most approaches …

Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions

Z Li, MS Barker - GigaScience, 2020 - academic.oup.com
Background Polyploidy, or whole-genome duplications (WGDs), repeatedly occurred during
green plant evolution. To examine the evolutionary history of green plants in a …