[HTML][HTML] Macrocycles: lessons from the distant past, recent developments, and future directions

AK Yudin - Chemical science, 2015 - pubs.rsc.org
A noticeable increase in molecular complexity of drug targets has created an unmet need in
the therapeutic agents that are larger than traditional small molecules. Macrocycles, which …

Antimicrobial peptides: premises and promises

KVR Reddy, RD Yedery, C Aranha - International journal of antimicrobial …, 2004 - Elsevier
Antimicrobial peptides (AMPs) are an important component of the natural defences of most
living organisms against invading pathogens. These are relatively small (< 10kDa), cationic …

Strategies for fine-tuning the conformations of cyclic peptides

R Jwad, D Weissberger, L Hunter - Chemical Reviews, 2020 - ACS Publications
Cyclic peptides are promising scaffolds for drug development, attributable in part to their
increased conformational order compared to linear peptides. However, when optimizing the …

Use of chemical shifts in macromolecular structure determination

DS Wishart, DA Case - Methods in enzymology, 2002 - Elsevier
Chemical shifts are the universal language of nuclear magnetic resonance (NMR). They
communicate in a simple way detailed molecular information that almost every chemist can …

[HTML][HTML] Cyclic peptide structure prediction and design using AlphaFold

SA Rettie, KV Campbell, AK Bera, A Kang, S Kozlov… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Deep learning networks offer considerable opportunities for accurate structure prediction
and design of biomolecules. While cyclic peptides have gained significant traction as a …

[HTML][HTML] Dissociation of antimicrobial and hemolytic activities in cyclic peptide diastereomers by systematic alterations in amphipathicity

LH Kondejewski, M Jelokhani-Niaraki… - Journal of Biological …, 1999 - ASBMB
We have investigated the role of amphipathicity in a homologous series of head-to-tail cyclic
antimicrobial peptides in efforts to delineate features resulting in high antimicrobial activity …

Generality of peptide cyclization catalyzed by isolated thioesterase domains of nonribosomal peptide synthetases

RM Kohli, JW Trauger, D Schwarzer, MA Marahiel… - Biochemistry, 2001 - ACS Publications
The C-terminal thioesterase (TE) domains from nonribosomal peptide synthetases (NRPSs)
catalyze the final step in the biosynthesis of diverse biologically active molecules. In many …

A macrocyclic peptide ligand binds the oncogenic MicroRNA-21 precursor and suppresses dicer processing

MD Shortridge, MJ Walker, T Pavelitz… - ACS chemical …, 2017 - ACS Publications
MicroRNAs (miRNAs) help orchestrate cellular growth and survival through post-
transcriptional mechanisms. The dysregulation of miRNA biogenesis can lead to cellular …

Structure–activity relationships of de novo designed cyclic antimicrobial peptides based on gramicidin S

DL Lee, RS Hodges - Peptide Science, 2003 - Wiley Online Library
The cyclic β‐sheet structure possessed by the 10‐residue antibiotic peptide gramicidin S
was taken as the structural framework for the de novo design of biologically active peptides …

Human antimicrobial peptides: Spectrum, mode of action and resistance mechanisms

BS Fazly Bazzaz, S Seyedi, N Hoseini Goki… - International Journal of …, 2021 - Springer
Overuse of antibiotics is one of the important factors that contribute to developing
antimicrobial resistance. Many studies have been conducted to find out promising solutions …