Aromaticity from the viewpoint of molecular geometry: application to planar systems

TM Krygowski, H Szatylowicz, OA Stasyuk… - Chemical …, 2014 - ACS Publications
Following the history of organic chemistry, studies on relations between chemical (and later
physicochemical) properties and the structure of chemical species in question are the heart …

Hydrogen bond design principles

LJ Karas, CH Wu, R Das, JIC Wu - Wiley Interdisciplinary …, 2020 - Wiley Online Library
Hydrogen bonding principles are at the core of supramolecular design. This overview
features a discussion relating molecular structure to hydrogen bond strengths, highlighting …

Substituent effects of nitro group in cyclic compounds

A Jezuita, K Ejsmont, H Szatylowicz - Structural Chemistry, 2021 - Springer
Numerous studies on nitro group properties are associated with its high electron-
withdrawing ability, by means of both resonance and inductive effect. The substituent effect …

Reciprocal hydrogen bonding–aromaticity relationships

JI Wu, JE Jackson, PR Schleyer - Journal of the American …, 2014 - ACS Publications
Computed association energies and dissected nucleus-independent chemical shifts (NICS)
document the mutual enhancement (or reduction) of intermolecular interactions and the …

Geometric and energetic consequences of prototropy for adenine and its structural models–a review

ED Raczyńska, M Makowski, M Hallmann… - RSC advances, 2015 - pubs.rsc.org
Heterocycles containing one or more amidine moieties {–NH–C (R) N–} such as adenine
and its building blocks, imidazole, 4-aminopyrimidine, and purine, are excellent examples of …

[HTML][HTML] Application of the extended HOMED (harmonic oscillator model of aromaticity) index to simple and tautomeric five-membered heteroaromatic cycles with C, N …

ED Raczyńska - Symmetry, 2019 - mdpi.com
The geometry-based HOMA (Harmonic Oscillator Model of Aromaticity) descriptor, based on
the reference compounds of different delocalizations of n-and π-electrons, can be applied to …

Effect of alkali metal cations on length and strength of hydrogen bonds in DNA base pairs

OA Stasyuk, M Sola, M Swart… - …, 2020 - Wiley Online Library
For many years, non‐covalently bonded complexes of nucleobases have attracted
considerable interest. However, there is a lack of information about the nature of hydrogen …

Structure–activity features of purines and their receptors: Implications in cell physiopathology

M Díaz-Muñoz, R Hernández-Muñoz… - Molecular …, 2022 - Springer
The purine molecular structure consists of fused pyrimidine and imidazole rings. Purines are
main pieces that conform the structure of nucleic acids which rule the inheritance processes …

Stacking of nucleic acid bases: optimization of the computational approach—the case of adenine dimers

PH Marek, H Szatylowicz, TM Krygowski - Structural Chemistry, 2019 - Springer
Stacking interactions play an important role in stabilizing DNA and RNA secondary structure.
To select a computational level to study the stacking interactions, both energy and geometric …

Aromaticity of nucleic acid bases

H Szatylowicz, OA Stasyuk, M Solà… - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Abstract 3D shape and the resulting physicochemical properties of double‐helical DNA/RNA
structures are determined not only by individual nucleobases, but also by their additive …