Organization and regulation of gene transcription

P Cramer - Nature, 2019 - nature.com
The regulated transcription of genes determines cell identity and function. Recent structural
studies have elucidated mechanisms that govern the regulation of transcription by RNA …

Structural insights into nuclear transcription by eukaryotic DNA-dependent RNA polymerases

M Girbig, AD Misiaszek, CW Müller - Nature Reviews Molecular Cell …, 2022 - nature.com
The eukaryotic transcription apparatus synthesizes a staggering diversity of RNA molecules.
The labour of nuclear gene transcription is, therefore, divided among multiple DNA …

Structural basis of nucleosome disassembly and reassembly by RNAPII elongation complex with FACT

H Ehara, T Kujirai, M Shirouzu, H Kurumizaka… - Science, 2022 - science.org
During gene transcription, RNA polymerase II (RNAPII) traverses nucleosomes in chromatin,
but the mechanism has remained elusive. Using cryo–electron microscopy, we obtained …

Causes and consequences of RNA polymerase II stalling during transcript elongation

M Noe Gonzalez, D Blears, JQ Svejstrup - Nature reviews Molecular …, 2021 - nature.com
The journey of RNA polymerase II (Pol II) as it transcribes a gene is anything but a smooth
ride. Transcript elongation is discontinuous and can be perturbed by intrinsic regulatory …

Challenges and opportunities in cryo-EM single-particle analysis

D Lyumkis - Journal of Biological Chemistry, 2019 - ASBMB
Cryogenic electron microscopy (cryo-EM) enables structure determination of
macromolecular objects and their assemblies. Although the techniques have been …

Nucleosome structure and dynamics are coming of age

K Zhou, G Gaullier, K Luger - Nature structural & molecular biology, 2019 - nature.com
Since the first high-resolution structure of the nucleosome was reported in 1997, the
available information on chromatin structure has increased very rapidly. Here, we review …

Structural basis of nucleosome retention during transcription elongation

M Filipovski, JHM Soffers, SM Vos, L Farnung - Science, 2022 - science.org
In eukaryotes, RNA polymerase (Pol) II transcribes chromatin and must move past
nucleosomes, often resulting in nucleosome displacement. How Pol II unwraps the DNA …

FACT caught in the act of manipulating the nucleosome

Y Liu, K Zhou, N Zhang, H Wei, YZ Tan, Z Zhang… - Nature, 2020 - nature.com
The organization of genomic DNA into nucleosomes profoundly affects all DNA-related
processes in eukaryotes. The histone chaperone known as 'facilitates chromatin …

Structures of+ 1 nucleosome–bound PIC-Mediator complex

X Chen, X Wang, W Liu, Y Ren, X Qu, J Li, X Yin, Y Xu - Science, 2022 - science.org
RNA polymerase II–mediated eukaryotic transcription starts with the assembly of the
preinitiation complex (PIC) on core promoters. The+ 1 nucleosome is well positioned about …

[HTML][HTML] Structure of a backtracked hexasomal intermediate of nucleosome transcription

L Farnung, M Ochmann, G Garg, SM Vos, P Cramer - Molecular Cell, 2022 - cell.com
During gene transcription, RNA polymerase II (RNA Pol II) passes nucleosomes with the
help of various elongation factors. Here, we show that RNA Pol II achieves efficient …