Embracing the unknown: disentangling the complexities of the soil microbiome

N Fierer - Nature Reviews Microbiology, 2017 - nature.com
Soil microorganisms are clearly a key component of both natural and managed ecosystems.
Despite the challenges of surviving in soil, a gram of soil can contain thousands of individual …

Revisiting life strategy concepts in environmental microbial ecology

A Ho, DP Di Lonardo… - FEMS microbiology …, 2017 - academic.oup.com
Microorganisms are physiologically diverse, possessing disparate genomic features and
mechanisms for adaptation (functional traits), which reflect on their associated life strategies …

Life history strategies among soil bacteria—dichotomy for few, continuum for many

BWG Stone, P Dijkstra, BK Finley, R Fitzpatrick… - The ISME …, 2023 - academic.oup.com
Study of life history strategies may help predict the performance of microorganisms in nature
by organizing the complexity of microbial communities into groups of organisms with similar …

Applying the core microbiome to understand host–microbe systems

A Risely - Journal of Animal Ecology, 2020 - Wiley Online Library
The host‐associated core microbiome was originally coined to refer to common groups of
microbes or genes that were likely to be particularly important for host biological function …

Nitrification and nitrifiers in acidic soils

Y Li, SJ Chapman, GW Nicol, H Yao - Soil Biology and Biochemistry, 2018 - Elsevier
Nitrification, as a crucial step in nitrogen cycling and plant nutrition, is a biologically
mediated process responsible for enormous losses of nitrogen fertilizer and a contributor to …

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing

RC Wilhelm, R Singh, LD Eltis, WW Mohn - The ISME Journal, 2019 - academic.oup.com
Delignification, or lignin-modification, facilitates the decomposition of lignocellulose in
woody plant biomass. The extant diversity of lignin-degrading bacteria and fungi is …

Temperature sensitivity of SOM decomposition is linked with a K‐selected microbial community

H Li, S Yang, MV Semenov, F Yao, J Ye… - Global Change …, 2021 - Wiley Online Library
Temperature sensitivity (Q10) of soil organic matter (SOM) decomposition is a crucial
parameter to predict the fate of soil carbon (C) under global warming. Nonetheless, the …

A phylogenetic transform enhances analysis of compositional microbiota data

JD Silverman, AD Washburne, S Mukherjee, LA David - Elife, 2017 - elifesciences.org
Surveys of microbial communities (microbiota), typically measured as relative abundance of
species, have illustrated the importance of these communities in human health and disease …

Long-term nitrogen and phosphorus fertilization reveals that phosphorus limitation shapes the microbial community composition and functions in tropical montane …

X Ma, Z Zhou, J Chen, H Xu, S Ma, MA Dippold… - Science of the Total …, 2023 - Elsevier
Microorganisms govern soil nutrient cycling. It is therefore critical to understand their
responses to human-induced increases in N and P inputs. We investigated microbial …

Investigating the effects of organic amendments on soil microbial composition and its linkage to soil organic carbon: A global meta-analysis

J Cui, B Yang, M Zhang, D Song, X Xu, C Ai… - Science of The Total …, 2023 - Elsevier
Understanding the dynamics of soil microbial communities responsible for soil element
cycling is vital to understanding organic amendments' mechanisms in agricultural soil …