Xrn2 substrate mapping identifies torpedo loading sites and extensive premature termination of RNA pol II transcription

MA Cortazar, B Erickson, N Fong… - Genes & …, 2022 - genesdev.cshlp.org
The exonuclease torpedo Xrn2 loads onto nascent RNA 5′-PO 4 ends and chases down
pol II to promote termination downstream from polyA sites. We report that Xrn2 is recruited to …

Dynamic turnover of paused Pol II complexes at human promoters

B Erickson, RM Sheridan, M Cortazar… - Genes & …, 2018 - genesdev.cshlp.org
Abstract Paused RNA polymerase II (Pol II) that piles up near most human promoters is the
target of mechanisms that control entry into productive elongation. Whether paused Pol II is …

RNA polymerase II termination involves C-terminal-domain tyrosine dephosphorylation by CPF subunit Glc7

A Schreieck, AD Easter, S Etzold… - Nature structural & …, 2014 - nature.com
At the 3′ ends of protein-coding genes, RNA polymerase (Pol) II is dephosphorylated at
tyrosine residues (Tyr1) of its C-terminal domain (CTD). In addition, the associated cleavage …

Genome-wide mapping of yeast RNA polymerase II termination

P Schaughency, J Merran, JL Corden - PLoS genetics, 2014 - journals.plos.org
Yeast RNA polymerase II (Pol II) terminates transcription of coding transcripts through the
polyadenylation (pA) pathway and non-coding transcripts through the non-polyadenylation …

A role for FACT in RNA polymerase II promoter-proximal pausing

TT Tettey, X Gao, W Shao, H Li, BA Story… - Cell reports, 2019 - cell.com
FACT (facilitates chromatin transcription) is an evolutionarily conserved histone chaperone
that was initially identified as an activity capable of promoting RNA polymerase II (Pol II) …

[HTML][HTML] Long noncoding RNAs in interaction with RNA binding proteins in hepatocellular carcinoma

A Mohamadkhani - Hepatitis monthly, 2014 - ncbi.nlm.nih.gov
Background: Gene expression microarrays' analyses provide a description of long
noncoding RNAs (lncRNAs) with lack of coding protein function that is often important in …

Time to move on: Modeling transcription dynamics during an embryonic transition away from maternal control

J Liu, Y Xiao, T Zhang, J Ma - Fly, 2016 - Taylor & Francis
In a recent study, we investigated the regulation of hunchback (hb) transcription dynamics in
Drosophila embryos. Our results suggest that shutdown of hb transcription at early nuclear …

Nascent RNA signaling to yeast RNA Pol II during transcription elongation

E Klopf, M Moes, F Amman, B Zimmermann… - Plos one, 2018 - journals.plos.org
Transcription as the key step in gene expression is a highly regulated process. The speed of
transcription elongation depends on the underlying gene sequence and varies on a gene by …

Unravelling Transcriptome 3'End Diversity in an Estrogen-Responsive Breast Cancer Cell Line Model

DN Döken - 2023 - search.proquest.com
Next-generation sequencing techniques allowed a better understanding of cancer
transcriptomes. Despite advancements, technical limitations still exist to fully decipher the …

UpSET-ing the balance: Modulating open chromatin features in metazoan genomes

H Rincon-Arano, SM Parkhurst, M Groudine - Fly, 2013 - Taylor & Francis
Appropriate gene expression relies on the sophisticated interplay between genetic and
epigenetic factors. Histone acetylation and an open chromatin configuration are key features …