Molecular simulation of fluids: Theory, algorithms, object-orientation, and parallel computing

RJ Sadus - 2023 - books.google.com
Molecular simulation allows researchers unique insight into the structures and interactions
at play in fluids. Since publication of the first edition of Molecular Simulation of Fluids, novel …

Recent applications of Kirkwood–Buff theory to biological systems

V Pierce, M Kang, M Aburi, S Weerasinghe… - Cell biochemistry and …, 2008 - Springer
The effect of cosolvents on biomolecular equilibria has traditionally been rationalized using
simple binding models. More recently, a renewed interest in the use of Kirkwood–Buff (KB) …

A Kirkwood–Buff derived force field for sodium chloride in water

S Weerasinghe, PE Smith - The Journal of chemical physics, 2003 - pubs.aip.org
A force field for the simulation of mixtures of sodium chloride and water is described. The
model is specifically designed to reproduce the experimentally determined Kirkwood–Buff …

Grand-Canonical-like Molecular-Dynamics Simulations by Using<? format?> an Adaptive-Resolution Technique

H Wang, C Hartmann, C Schütte, L Delle Site - Physical Review X, 2013 - APS
In this work, we provide a detailed theoretical analysis, supported by numerical tests, of the
reliability of the adaptive-resolution-simulation (AdResS) technique in sampling the grand …

[HTML][HTML] Molecular systems with open boundaries: Theory and simulation

L Delle Site, M Praprotnik - Physics Reports, 2017 - Elsevier
Typical experimental setups for molecular systems must deal with a certain coupling to the
external environment, that is, the system is open and exchanges mass, momentum, and …

Properties of 2, 2, 2-trifluoroethanol and water mixtures

R Chitra, PE Smith - The Journal of Chemical Physics, 2001 - pubs.aip.org
2, 2, 2-trifluoroethanol (TFE) is a commonly used cosolvent in experimental studies of
peptides and proteins. Although concentration-dependent TFE effects have been well …

Molecular association in solution: A kirkwood− buff analysis of sodium chloride, ammonium sulfate, guanidinium chloride, urea, and 2, 2, 2-trifluoroethanol in water

R Chitra, PE Smith - The Journal of Physical Chemistry B, 2002 - ACS Publications
Molecular association has been investigated as a function of solution composition for
sodium chloride (NaCl), guanidinium chloride (GdmCl), ammonium sulfate ((NH4) 2SO4) …

Molecular simulation of aqueous electrolyte solubility. 2. Osmotic ensemble Monte Carlo methodology for free energy and solubility calculations and application to …

F Moucka, M Lísal, J Skvor, J Jirsák… - The Journal of …, 2011 - ACS Publications
We present a new and computationally efficient methodology using osmotic ensemble
Monte Carlo (OEMC) simulation to calculate chemical potential–concentration curves and …

Cosolvent interactions with biomolecules: Relating computer simulation data to experimental thermodynamic data

PE Smith - The Journal of Physical Chemistry B, 2004 - ACS Publications
A major difficulty often encountered when the effects of cosolvents on the structure of
biomolecules is studied by computer simulation is an inability to relate the simulation results …

A comparison of the properties of 2, 2, 2-trifluoroethanol and 2, 2, 2-trifluoroethanol/water mixtures using different force fields

R Chitra, PE Smith - The Journal of Chemical Physics, 2001 - pubs.aip.org
Many studies of peptides and proteins involve the use of 2, 2, 2-trifluoroethanol TFE as a
cosolvent. 1, 2 Mixtures of TFE and water are known to promote the formation of secondary …